Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0887
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in...    30   2.0  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   6.2  
AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AF003134-5|AAB54139.1|  357|Caenorhabditis elegans Nek (never in
           mitosis kinase) likeprotein 2 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +3

Query: 444 FGTSPLRHAKAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNLKKKIRKAPVNL*PLKPFI 623
           FG   L   K    ++ V    I+T+ +     NS+ SE NL KK++  P+ +  +  FI
Sbjct: 15  FGVCWLCRGKNDASHQKVIIKLINTHGMTEKEENSIQSEVNLLKKVQH-PLIIGYIDSFI 73

Query: 624 IKVHVGRMLLKTFQSILNRILDDIR 698
           +   +G ++       L R+++D R
Sbjct: 74  MDNQLGIVMQYAEGGTLERLINDQR 98


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 495 VNTLSIDTNKLKIIANNSLSSEPNLKKKIRKAPV 596
           ++TL +  NK+  + N SLS   NL  ++++ PV
Sbjct: 374 LHTLDLANNKIMSLQNKSLSGPENLAVRLQENPV 407


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 238 NRYDHLNFIEFYILFVHSIKLFLIRNISMIN 146
           N +  LNF+E ++ +   I+LF + N+S  N
Sbjct: 54  NSFLLLNFVESFLFYKKEIRLFFLNNLSTKN 84


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 495 VNTLSIDTNKLKIIANNSLSSEPNLKKKIRKAPV 596
           ++TL +  NK+  + N SLS   NL  ++++ PV
Sbjct: 374 LHTLDLANNKIMSLQNKSLSGPENLAVRLQENPV 407


>AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical
           protein Y64G10A.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 404 LHHYSRAHCTYFSFRTPKY*FYKVDFLNYYSLIQSILNNCT 282
           L H     C +FS+  PKY F+ ++ L  YS+  S++   T
Sbjct: 579 LQHPCVISC-HFSYTNPKYVFFPINRLLQYSIPNSLMTMTT 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,705
Number of Sequences: 27780
Number of extensions: 267056
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)