Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0887
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.44 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   7.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 639 GRMLLKTFQSILNRILDDIRLSIQISDFI 725
           GR LL  FQ+    + DD+ + +Q+   I
Sbjct: 180 GRALLGRFQTTSQNLEDDVEIKVQVESVI 208


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 639 GRMLLKTFQSILNRILDDIR 698
           G  L +TF++ +NRIL+D R
Sbjct: 191 GNTLRQTFENQVNRILNDAR 210


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 599 PIAPKTFYNKSSCWTNVTKNVSI 667
           P   + F+NK   WT+V K + I
Sbjct: 794 PYTFEQFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 599 PIAPKTFYNKSSCWTNVTKNVSI 667
           P   + F+NK   WT+V K + I
Sbjct: 832 PYTFEQFHNKELLWTSVKKALMI 854


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 208 FYILFVHSIKLFLI 167
           F I+F+HSI L LI
Sbjct: 5   FSIMFIHSIFLILI 18


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 208 FYILFVHSIKLFLI 167
           F I+F+HSI L LI
Sbjct: 5   FSIMFIHSIFLILI 18


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 587 FPDFFFQIWLRAK 549
           +PD FF I LR K
Sbjct: 222 YPDIFFNITLRRK 234


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 252 ITSRLRFNIKCTVIQNALN 308
           ITS  R N+KC++++ + N
Sbjct: 74  ITSYHRINLKCSLVEFSEN 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,577
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)