Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0887
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49290.1 68418.m06100 leucine-rich repeat family protein cont...    30   1.4  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    29   4.4  

>At5g49290.1 68418.m06100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 888

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 463 LSGDVPKRYVGSYMI*FYSFYITILEHTVLTFHFAPRNINF 341
           LSG++P+ +V S     +S  I  L H   + HF PR  NF
Sbjct: 430 LSGELPQSFVSSC----FSLSILQLSHNKFSGHFLPRQTNF 466


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 447 GTSPLRHAKAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNLKKKIRKAP 593
           G  P    KAVCD    + L   +NK+ I+ +     + N  +KI K P
Sbjct: 229 GADPKDFVKAVCDLGFTSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,723
Number of Sequences: 28952
Number of extensions: 228010
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)