Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0884
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               50   2e-06
SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         49   3e-06

>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +2

Query: 380 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTFH 535
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V  +TLTRFY+ H
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLH 115


>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
 Frame = +1

Query: 145 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFF---YLHL 273
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FF   Y H+
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHI 46



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +2

Query: 257 FFICIYLHIGRGIYYESFN 313
           FFIC+Y HIGRG+YY S++
Sbjct: 38  FFICLYAHIGRGLYYGSYS 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,799
Number of Sequences: 59808
Number of extensions: 264137
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)