Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0880
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   4.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   6.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   6.3  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    25   6.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   8.4  

>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 VLSNERLLKSYTKCLLNQGPCTAELKKIKEALE 216
           +LS  R        L+N G C AELK+   A+E
Sbjct: 690 ILSKVREAIKDATTLINIGNCLAELKQFSRAIE 722


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +1

Query: 130 ERLLKSY---TKCLLNQGPCTAELKKIKEALETHCAKCTDKQKQMAKQLAQGIKKTHP-E 297
           ERL+KS     KC LN      EL   K   +T         +++ K+L   ++     E
Sbjct: 433 ERLVKSQGDLVKCFLNIQYRMHELIS-KFPSDTFYDSKLVPAEEVKKRLLMDLENVEETE 491

Query: 298 LWDEFITFYDPQGKYQ 345
           L D  I FYD  G YQ
Sbjct: 492 LTDSPIYFYDTLGNYQ 507


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 223 NGSPKLL*FSSILQCRALD 167
           +G+PKL  FSSI+Q R+ D
Sbjct: 102 SGAPKLQAFSSIVQSRSCD 120


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 221 IVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFT 325
           IV  V  NR+R  ++++  LR H  S  T   LF+
Sbjct: 128 IVEAVTDNRARAASSIKHILRNHGASLSTVKFLFS 162


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 274 LAQVVSPSASVYQYISHNGSPKLL*FSSIL 185
           LA ++SP+A+++QY  +    K L  S +L
Sbjct: 563 LASIISPAATIHQYFFYLQHKKELNASELL 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,858
Number of Sequences: 5004
Number of extensions: 36521
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)