Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0880
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0238 + 15947546-15948157,15948444-15948524,15948603-15948707     31   0.39 
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    27   8.4  
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    27   8.4  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    27   8.4  

>09_04_0238 + 15947546-15948157,15948444-15948524,15948603-15948707
          Length = 265

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -2

Query: 305 SHNSGCVFLIP-CASCFAICFCLSVHFAQWVSKASLIFFNSAVQGP*FSKHLVYDLRSLS 129
           S N+G  +  P  A C  +   LSV F   V+   L+ F + ++ P F    V   RS S
Sbjct: 17  SCNNGAHWPPPQSARCLCLYLALSVVFFALVAAVLLVVFVARLKKPTFLLQSVQMDRSFS 76

Query: 128 LLKTSEASKLSSIGS 84
           L+++S +S  S+ G+
Sbjct: 77  LIQSSLSSSASANGT 91


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 220 HCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFKDF 363
           H  + +D ++   KQ    +   +   +D F+T YD    YQ S ++F
Sbjct: 146 HMGRLSDGREVAIKQFHDDLS-IYASKYDPFVTHYDHDEFYQRSIEEF 192


>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 282 EDTPGVMGRVHYFLRPSR 335
           ED  G+  + HYF+RPSR
Sbjct: 158 EDVLGLFRKFHYFVRPSR 175


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 119 TSEASKLSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRF 3
           T  +  +SSI SY S  ST++NR  K N S +L  ST +
Sbjct: 181 TESSMDMSSILSYQSNNSTSQNRGLK-NFSLLLSLSTLY 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,022
Number of Sequences: 37544
Number of extensions: 193681
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)