Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0880
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-5|AAA81091.2|  323|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   3.3  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   3.3  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   3.3  
Z92829-2|CAB07340.2|  310|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    27   7.6  
AL032646-11|CAE46682.1|  193|Caenorhabditis elegans Hypothetical...    27   7.6  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    27   7.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    27   7.6  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U39996-5|AAA81091.2|  323|Caenorhabditis elegans Hypothetical
           protein C56E6.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +1

Query: 190 LKKIKEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFKDFLE 369
           ++K K+ALE H  K   + ++++  +     +THP+++  ++ F + QG  +  F +F  
Sbjct: 197 IRKDKQALEKHRQKMGGQSRRLSTMIFNRKDQTHPDVYLIYV-FLNGQG-MECQFMNFQR 254

Query: 370 S*INK 384
             + K
Sbjct: 255 KQLEK 259


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
 Frame = -1

Query: 396 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 244
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 243 FISTFRTMGLQSF---FNF 196
           FI  F  +G+Q F   FNF
Sbjct: 610 FIVIFALLGMQVFGGKFNF 628


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
 Frame = -1

Query: 396 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 244
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 243 FISTFRTMGLQSF---FNF 196
           FI  F  +G+Q F   FNF
Sbjct: 610 FIVIFALLGMQVFGGKFNF 628


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 282 EDTPGVMGRVHYFLRPSRKISNFFQRFS*VL 374
           E+ P V+GR H  L+P     N++++F  V+
Sbjct: 155 ENDPRVIGRAHSILKPYGLAGNYWEKFGEVM 185


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
 Frame = -1

Query: 396 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 244
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 243 FISTFRTMGLQSF---FNF 196
           FI  F  +G+Q F   FNF
Sbjct: 610 FIVIFALLGMQVFGGKFNF 628


>Z92829-2|CAB07340.2|  310|Caenorhabditis elegans Hypothetical
           protein F10A3.2 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 231 FRTMGLQSFFNFLQFCSAGPLIQ*TLSVRL-KKPFVTQDFRSIKAVID 91
           F T+ L+ FF  L+  +   L+Q  L+V + KK F T+ F ++ + ++
Sbjct: 104 FETLALKDFFEILKQKTKLELVQINLNVNVTKKDFRTKCFTNLLSTLE 151


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 121 LSNERLLKSYTKCLLNQGPCTAELKKIKEALETHCAKCTDKQKQMAKQL 267
           L+ + +LK+Y+KCLL+   CT   K +         K T+      K+L
Sbjct: 62  LTADFVLKAYSKCLLDGILCTWRRKPLPPTDNKETPKLTNFSNDAPKEL 110


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 121 LSNERLLKSYTKCLLNQGPCTAELKKIKEALETHCAKCTDKQKQMAKQL 267
           L+ + +LK+Y+KCLL+   CT   K +         K T+      K+L
Sbjct: 62  LTADFVLKAYSKCLLDGILCTWRRKPLPPTDNKETPKLTNFSNDAPKEL 110


>AL032646-11|CAE46682.1|  193|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11b protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 245 CLSVHFAQWVSKASLIFFNSAVQGP*FSKHLVYDLRSLSLLKTSEA 108
           CL V   +W  + S  F   ++ G  F K+  +  RS   +K  EA
Sbjct: 91  CLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEA 136


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 245 CLSVHFAQWVSKASLIFFNSAVQGP*FSKHLVYDLRSLSLLKTSEA 108
           CL V   +W  + S  F   ++ G  F K+  +  RS   +K  EA
Sbjct: 91  CLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEA 136


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 121 LSNERLLKSYTKCLLNQGPCTAELKKIKEALETHCAKCTDKQKQMAKQL 267
           L+ + +LK+Y+KCLL+   CT   K +         K T+      K+L
Sbjct: 62  LTADFVLKAYSKCLLDGILCTWRRKPLPPTDNKETPKLTNFSNDAPKEL 110


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 296 SGCVFLIPCASCFAICFCL 240
           S  + ++   SCF ICFC+
Sbjct: 199 STAIIIVTLISCFTICFCI 217


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +1

Query: 76  DKYEPIDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKIKEALETHCAKCTDKQKQM 255
           D++   DDSFD    ++    +K  T     + P   EL  +K+      +    K+K+ 
Sbjct: 180 DEFVDSDDSFDTFTPIT----VKKKTPEKRKETPKKKELPSVKKEFPKKQSIPVKKEKET 235

Query: 256 AKQLAQGIKKTHPELWDE 309
            ++ A  +KK  P++  E
Sbjct: 236 PQKKALSVKKDPPKVTSE 253


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 115 EVLSNERLLKSYTKCLLNQGPCTAELKKIKEALETHCAKCTD 240
           +V+ + R + SY+K    +  CT  LK + + L   C + T+
Sbjct: 154 DVVGDLRRMHSYSKLHKGRNMCTTALKVLMKDLAAECKRNTE 195


>AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical
           protein Y57A10A.3 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 402 NKLKYCFIYLRLKKIFERSLIFSLRVV 322
           +K+ +CF + +L  +   S+IFSL +V
Sbjct: 205 SKISHCFFFAKLPNLLYFSVIFSLIIV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,479
Number of Sequences: 27780
Number of extensions: 201746
Number of successful extensions: 651
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)