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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0880
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    30   0.75 
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    30   1.00 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   3.0  
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote...    28   4.0  
At2g18880.1 68415.m02203 fibronectin type III domain-containing ...    27   5.3  
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    27   7.0  
At4g37440.1 68417.m05299 expressed protein                             27   7.0  
At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:...    27   7.0  
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont...    27   9.3  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    27   9.3  
At2g37070.1 68415.m04549 expressed protein                             27   9.3  

>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 238 DKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFK 357
           +K + M + LA+  K T PE W+   T Y  +G  + +FK
Sbjct: 354 EKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFK 393


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 187 ELKKIKEALETHCAKCTDKQKQMA--KQLAQGIKKTHP 294
           +L+KIKE L   C   TDK K+ A     A G+ K  P
Sbjct: 201 QLEKIKEQLVQSCNVATDKSKEQAPSSSSASGLNKAPP 238


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 85   EPIDDSFDASEVLSNERLLKSYTKCLLNQGPCT 183
            EP+D     + V+S+  L+ SY +CL +QG  T
Sbjct: 2496 EPLDTPTMNNVVMSSVELIYSYAECLASQGKDT 2528


>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 397

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 115 EVLSNERLLKSYTKCLLNQGPCTAELKKIKEALETH 222
           E+L  E LLK   K   +  P  AE++K K  L  H
Sbjct: 340 EILHTETLLKEVEKVFGSVNPNPAEVEKAKRVLRDH 375


>At2g18880.1 68415.m02203 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 417

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 160 LLNQGPCTAELKKI--KEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFI-TFYD 327
           L+ Q  C+ ++K    K+ L  +C K TDK+K + +      K     L  + I TF D
Sbjct: 334 LIRQLECSGQVKSDFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKEALAKQLIDTFSD 392


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 73  QDKYEPIDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKI 201
           QD  + +   F  S V+ ++R   SY+KCLLN      EL+KI
Sbjct: 48  QDSRKLLPGDFYPSWVVFSQRQKLSYSKCLLNW--LNLELEKI 88


>At4g37440.1 68417.m05299 expressed protein
          Length = 471

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 194 RKLKKLWRPIVRNVLINRSRWRNNLRKELRRHTRSY 301
           RKL   WR  V+  L+ R +W     KEL+   + Y
Sbjct: 130 RKLTDHWRRFVQPTLMWRCKWIELKYKELQNQAQKY 165


>At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 818

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 100 SFDASEVLSNERLLKSYTKCLLNQGPCTAELKKI-KEALETHCAKCTDK 243
           S D S V+SN+  L+     +L + PC+  +    K  +E+H AK   K
Sbjct: 606 SVDRSTVISNDDNLRMLNVNVLRRAPCSVGIFVYRKPIVESHMAKSHSK 654


>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
           contains weak similarity to cytoplasmic linker protein
           CLIP-170 (GI:2905649) [Gallus gallus]
          Length = 588

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 184 AELKKIKEALETHCAKCTDKQKQMA------KQLAQGIKKTHPELWDEFI 315
           AELKK++EA+E   A   DK+ ++       + L   I K+  ++ D F+
Sbjct: 433 AELKKLREAIENLKADLMDKETELQIVSDENETLKSDIHKSETDVQDAFL 482


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 142 KSYTKCLLNQGPCTAELKKIKE---ALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEF 312
           K Y + +LN     AEL+K+KE    L  +    +        Q   GIKKT    W+++
Sbjct: 298 KVYCEQILNSD-LKAELEKLKEKEYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNKY 356

Query: 313 IT 318
           ++
Sbjct: 357 LS 358


>At2g37070.1 68415.m04549 expressed protein
          Length = 420

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 LRSLSLLKTSEASKLSSIGSYLS*ASTAKNRP 48
           LRS    K    S  SSI S LS +STA N+P
Sbjct: 173 LRSSVASKNELTSSCSSIESCLSVSSTASNKP 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,404
Number of Sequences: 28952
Number of extensions: 174939
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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