Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0878
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    28   1.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   1.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   5.8  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 355 SFVKHFILYIGSCVVKYSGTLERAWVR 435
           SFV   +L++G CV + +  LER W +
Sbjct: 264 SFVYQCLLFVGKCVNRVTPYLERFWFK 290


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 361 RKISASRHRTTVDIKYSHQIIKKNKQLSIYDLNYYAIS-GGH 239
           +K +A ++RTT +IK +   I+KNK+  +  LN   ++  GH
Sbjct: 232 KKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNENGH 273


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 371 KCLTKDFRVAPQNNSRHQIFAPNH*KKQTIIHLRSKLLCNKWGTPT--DYATLD 216
           K L KD  +   N  R+ + APN   K T++H    + C    TP+  D+  LD
Sbjct: 288 KLLIKDSELNLINGRRYGLIAPNGSGKSTLLH---AIACGLIPTPSSLDFYLLD 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,938
Number of Sequences: 5004
Number of extensions: 67233
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)