Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0878
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.88 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.88 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.88 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   4.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/54 (20%), Positives = 31/54 (57%)
 Frame = -3

Query: 399 YNTRSNI*NEMFNERFPRRATEQQSTSNIRTKSLKKTNNYPFTI*TIMQ*VGDT 238
           Y +RS++ ++   +++P   TEQ ++ ++ +  ++  N+  F +  +++   DT
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDT 380


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/54 (20%), Positives = 31/54 (57%)
 Frame = -3

Query: 399 YNTRSNI*NEMFNERFPRRATEQQSTSNIRTKSLKKTNNYPFTI*TIMQ*VGDT 238
           Y +RS++ ++   +++P   TEQ ++ ++ +  ++  N+  F +  +++   DT
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDT 380


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 806 FLLTYIDTLLTSPIHYLFTKNIYENFFNKPKV--FISNSRFLI 684
           F  T  D +L       F K+IYE + N+P V  + + S FL+
Sbjct: 42  FFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLL 84


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 355 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 462
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 278 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 355 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 462
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 278 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 355 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 462
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 217 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 253


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 730 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 632
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 57  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 89


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 730 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 632
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 25  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,152
Number of Sequences: 438
Number of extensions: 4757
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)