Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0878
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    31   0.73 
At4g02920.2 68417.m00396 expressed protein                             29   5.1  
At4g02920.1 68417.m00395 expressed protein                             29   5.1  
At4g39410.1 68417.m05578 WRKY family transcription factor identi...    28   9.0  

>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -2

Query: 700 IQDFLLEQSRKFDRTGIDSSDLNAEKMRSKNKMLR 596
           ++ FLLE S++F     +SS+++A K R KNK  R
Sbjct: 180 LKSFLLEMSQQFAPDESESSEISALKKRKKNKSRR 214


>At4g02920.2 68417.m00396 expressed protein
          Length = 419

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 751 PKIFMRIFLINLKFSYQ--IQDFLLEQSRKFDRTGIDSSDLNA----EKMRSKNKM 602
           P+  +  F I  KF+ Q  + +FLL QS +F   G D S LN     E M+S +++
Sbjct: 91  PESLILSFGIADKFARQEKVMEFLLSQSEEFKEKGFDMSLLNELMEFESMKSSSQL 146


>At4g02920.1 68417.m00395 expressed protein
          Length = 418

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 751 PKIFMRIFLINLKFSYQ--IQDFLLEQSRKFDRTGIDSSDLNA----EKMRSKNKM 602
           P+  +  F I  KF+ Q  + +FLL QS +F   G D S LN     E M+S +++
Sbjct: 90  PESLILSFGIADKFARQEKVMEFLLSQSEEFKEKGFDMSLLNELMEFESMKSSSQL 145


>At4g39410.1 68417.m05578 WRKY family transcription factor identical
           to WRKY transcription factor 13 GI:15991729 from
           [Arabidopsis thaliana]
          Length = 304

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 IIKNILGVNLNIYYFFPSPSHMS*CSWEGSSVA*SVGVPHLLHNSLD 270
           +I  I   +L  ++ FPS S +S  S   SS   S+  P L HNSL+
Sbjct: 17  VINPINTNHLGFFFSFPSHSTLSSSSSSSSSSPSSLVSPFLGHNSLN 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,650
Number of Sequences: 28952
Number of extensions: 310246
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)