Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0875
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.9  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   3.9  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   5.1  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    26   6.7  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   8.9  

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 272 KSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIE 442
           KSK     ++  + +P+K G  ++         + S KK  L+ KN    EDT D+E
Sbjct: 80  KSKSKDSSKKEPVVVPKK-GTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVE 135


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 454 LFINFYIYCILTHYLV-LSQKYIFLNTV*VIFI 359
           LFI   ++C+LT Y V LSQ  +  + + V+F+
Sbjct: 475 LFIRLALFCVLTTYNVSLSQTILLTSIMSVVFL 507


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 711 LTSSQIVFIAFMAIDS*ASYSSLSTFFPSKLSLVVPINNEI 589
           + SS I  + F+ +D  AS SS    FPS   LVV  N+E+
Sbjct: 686 VNSSMIDRVGFIVVDKSASNSSFGRSFPSCTVLVV--NSEL 724


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 754 PVINSYSVYKRPFLSDVITNC-FYRFYGHRFV 662
           P++ SY  YK+ F SDV   C    F+ H+F+
Sbjct: 606 PILTSYENYKQSF-SDVTIYCGTSMFHSHKFI 636


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 183 CRGY-SFYFMGDCFKHVAD-HWTVSEFHDLITY 91
           CR +  +Y   D  KH+AD +W ++   +L+ +
Sbjct: 197 CRTFCGYYISDDAIKHIADEYWKITAAMELVNF 229


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 629 GKKVLRLEYEAYESMAIKAIKTICDD 706
           G + LRL+Y   E  A++ +KT+ D+
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDE 300


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 371 LNSIKKNILLAKNEVVCEDTVDIEINEQDNL 463
           LNS KK   +   ++  ED+++  +N+++NL
Sbjct: 428 LNSEKKTFEILSTDIPAEDSMNSLLNDEENL 458


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 732 CTSGHFCLTSSQIVFIA 682
           CT G  CLT+ ++V+IA
Sbjct: 47  CTKGLLCLTNQRLVYIA 63


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 641 LRLEYEAYESMAIKAIKTICDDVRQKW 721
           L L Y+++E + +K  K IC D   +W
Sbjct: 453 LGLSYDSFEIINLKTGKDICPDEFNEW 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,969
Number of Sequences: 5004
Number of extensions: 59456
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)