Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0875
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14089| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_50193| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_3289| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.58 
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       30   1.8  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       29   4.1  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  29   4.1  

>SB_14089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +2

Query: 524 LTVDRLSVEEISELVTDDSCGAISLFIGTTRDNFE 628
           +T D L VE++  L    S GA+SLF+GTTRDNFE
Sbjct: 15  ITPDVLHVEQVMALAQSPSAGAVSLFVGTTRDNFE 49


>SB_50193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 251 VKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKY 367
           V LLFFA+S+EL+  +   I+LP +   + LL  I + Y
Sbjct: 1   VVLLFFAQSRELAEQKSAEISLPVETSREELLETITNLY 39


>SB_3289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
 Frame = +2

Query: 266 FAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEI 445
           F  SK    +    + LPR+     LL +  + Y   +      +  +      T+D   
Sbjct: 223 FVISKRTDSIINERVNLPRR-SMSGLLLLFVEPYTAGARDSEKFVYPDIKSVRVTIDGMP 281

Query: 446 NEQDNLAVIPPLS--GG*IVFHRMDHIKLTVDRLSVEEISELVTDDSCGAISLFIGTTRD 619
           N+    AV PPLS  GG      MD   +T + L       +V   SCG     +   R 
Sbjct: 282 NKGGEKAVRPPLSGGGGGATASGMDPKNITFNAL-------IVAPTSCGITRFIVDRLRG 334

Query: 620 NFEGK 634
           +F GK
Sbjct: 335 HFRGK 339


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +2

Query: 206  LW*IMEIENI-EDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSI 382
            +W   E+  + E T TV+ + +  ++ LS  R + I+    L       + C  Y++   
Sbjct: 2106 VWYRAEVLEVGEGTATVRYVDYGNTESLSTTRLSPIS--DSLLELPAQAVRCTLYSIPIT 2163

Query: 383  K-KNILLAKNEVVCEDTVDIEINEQD 457
            K + ++   NEV  + T+++E+ EQD
Sbjct: 2164 KAEQVVALLNEVCADGTIEVEVVEQD 2189


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 153 DCFKHVAD-HWTVSEFHDLITYTYFHTIDTYTLHSIILLDIFKYVVGTNVI 4
           D   HV + H+T+     L+TYTYF T     ++ ++   +  Y+VG  V+
Sbjct: 536 DLPSHVYEPHYTLLSVSVLLTYTYFITTPPVFVNGMVFGFLVAYLVGCVVL 586


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 153 DCFKHVAD-HWTVSEFHDLITYTYFHTIDTYTLHSIILLDIFKYVVGTNVI 4
           D   HV + H+T+     L+TYTYF T     ++ ++   +  Y+VG  V+
Sbjct: 410 DLPSHVYEPHYTLLSVSVLLTYTYFITTPPVFVNGMVFGFLVAYLVGCVVL 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,512,572
Number of Sequences: 59808
Number of extensions: 400912
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)