Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0875
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family ...    73   3e-13
At4g10100.2 68417.m01653 molybdenum cofactor synthesis family pr...    56   3e-08
At4g10100.1 68417.m01652 molybdenum cofactor synthesis family pr...    56   3e-08
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ...    28   7.8  

>At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family
           protein contains Pfam profile: PF02391 molybdopterin
           converting factor, subunit 2
          Length = 198

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 35/75 (46%), Positives = 46/75 (61%)
 Frame = +2

Query: 536 RLSVEEISELVTDDSCGAISLFIGTTRDNFEGKKVLRLEYEAYESMAIKAIKTICDDVRQ 715
           ++ V +  + V+    GAI+ F GTTRD FEGK VL L YEAY  MA + + +IC   R 
Sbjct: 17  KVDVVKYIDYVSAPQAGAIATFSGTTRDMFEGKTVLELRYEAYVPMATRCLSSICTTARS 76

Query: 716 KWPLVHGIAIYHRLG 760
            W  +H IA+ HRLG
Sbjct: 77  TWD-IHKIAVAHRLG 90


>At4g10100.2 68417.m01653 molybdenum cofactor synthesis family
           protein similar to Molybdenum cofactor synthesis protein
           2 small subunit (Molybdopterin- synthase small subunit)
           (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) [Homo sapiens];
           contains TIGRFAM TIGR01682: molybdopterin converting
           factor, subunit 1; contains Pfam PF02597: ThiS family
          Length = 96

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = +2

Query: 215 IMEIENIE-DTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKY-NLNSIKK 388
           + +IE+ +  +V +K+L FA+++EL+GV + ++ +P     Q+ L+ +  K+ +L  ++ 
Sbjct: 5   VTKIESDDTSSVEIKVLLFARARELTGVPDLTLKMPSGSTTQKCLDELVLKFPSLEEVRS 64

Query: 389 NILLAKNEVVCEDTVDIEINEQDNLAVIPPLSGG 490
            ++LA NE    D+  ++   +D LA+IPP+SGG
Sbjct: 65  CVVLALNEEYTTDSAIVQ--HRDELAIIPPISGG 96


>At4g10100.1 68417.m01652 molybdenum cofactor synthesis family
           protein similar to Molybdenum cofactor synthesis protein
           2 small subunit (Molybdopterin- synthase small subunit)
           (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) [Homo sapiens];
           contains TIGRFAM TIGR01682: molybdopterin converting
           factor, subunit 1; contains Pfam PF02597: ThiS family
          Length = 96

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = +2

Query: 215 IMEIENIE-DTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKY-NLNSIKK 388
           + +IE+ +  +V +K+L FA+++EL+GV + ++ +P     Q+ L+ +  K+ +L  ++ 
Sbjct: 5   VTKIESDDTSSVEIKVLLFARARELTGVPDLTLKMPSGSTTQKCLDELVLKFPSLEEVRS 64

Query: 389 NILLAKNEVVCEDTVDIEINEQDNLAVIPPLSGG 490
            ++LA NE    D+  ++   +D LA+IPP+SGG
Sbjct: 65  CVVLALNEEYTTDSAIVQ--HRDELAIIPPISGG 96


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 4706

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 VRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEI-NEQDNLAV 469
           ++  S  LP+ +   R+ N + +   L+++KK++ L   E   +D  D  +  +  NL +
Sbjct: 517 LKHPSFLLPKVVTPDRVRNFLKECKTLSALKKSLKLVLLEYCLDDLTDDSVCTQASNLKL 576

Query: 470 IPPLSG 487
           +P  +G
Sbjct: 577 LPLANG 582


>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
           similarity to Nogo-C protein [Rattus norvegicus]
           GI:6822251, SP|O95197 Reticulon protein 3
           (Neuroendocrine-specific protein-like) {Homo sapiens};
           contains Pfam profile PF02453: Reticulon
          Length = 257

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 167 FILWATALNMLLIIGPCRNFTI*LHTPT-FIQ*IPILY 57
           FIL    L +L IIG C NF    +T T  +  IP+LY
Sbjct: 173 FILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLY 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,881
Number of Sequences: 28952
Number of extensions: 281615
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)