Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0874
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    31   0.24 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    30   0.41 
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   2.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.9  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   6.7  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    26   6.7  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    25   8.9  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    25   8.9  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = +3

Query: 201 YEEQPQFRKDIDNAFLHN-GITSGLRSLSVDFILPCSESYVYITDDTTRDLIVFSLQDFR 377
           +++ P F  D+DNA L    I +   S SVD      + + +  DD+   L   S+ D  
Sbjct: 7   WDDDPDFASDVDNASLFTQSIATTSASTSVD------DGFSF--DDSISRLNSLSISD-- 56

Query: 378 FTKISRASNTADSWKFMVPRICREMSTAQNRADYNKNPY 494
              +  A +  + W   V  +  E+S+ +NR   N   Y
Sbjct: 57  ---VPSAHSRVEQWNQQVHNLNHELSSNKNRISSNVEGY 92


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 11/17 (64%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
 Frame = +3

Query: 711 PN-YEGMLYTKNYDGDI 758
           PN YEG+++ KNYDGD+
Sbjct: 809 PNLYEGLVFLKNYDGDV 825


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 313 DSEHGNIKSTDRDRSPLVIP 254
           DS +GNIK++  D  P+V+P
Sbjct: 73  DSHYGNIKASVNDIEPIVLP 92


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 431 HHKFPRISRITCAADFRK--TKVLKRED 354
           H  FP  S  TC  D +K   KV KR D
Sbjct: 203 HELFPNASEFTCVRDLKKLEKKVKKRSD 230


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 152 WDIQISCINKPYSRTNCFNHRKN 84
           WD  +S I++P S     NH  N
Sbjct: 438 WDFSVSAIHRPKSAVYYVNHHSN 460


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 273 RSLSVDFILPCSESYVYITDDTTRDLIVFSLQDFRFTKISRASNTADS 416
           R   ++F+   S    +I+     DLI++S  +F F  +S A +T  S
Sbjct: 236 RDYVIEFMFWASMVMTHISR-LAEDLIIYSTSEFNFVTLSDAYSTGSS 282


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 538 LFLWIEFETQYRLEVEKYRKR 600
           L+ W EFE +YR  V   +KR
Sbjct: 164 LYHWAEFEARYRKNVADLQKR 184


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 537 KELVCIERLKYVYEDKDFCCNLRDF 463
           K L+C+   + VY  KD  C+ +DF
Sbjct: 49  KGLLCLTNQRLVYIAKDTDCDFKDF 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,068
Number of Sequences: 5004
Number of extensions: 66880
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)