Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0874
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70270-1|CAB61007.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF029887-1|AAC48376.1|  407|Caenorhabditis elegans UNC-129 protein.    29   3.6  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z70270-1|CAB61007.1|  407|Caenorhabditis elegans Hypothetical
           protein C53D6.2 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 279 LSVDFILPCSESYVYITDDTTRDLIVFSLQDFRFTKISRASNT 407
           LSV  I  C++  V + ++T RDL+ F   D   T   R+S+T
Sbjct: 10  LSVFSIANCAKVDVDLINETIRDLLHFKSSDPNVTSFHRSSHT 52


>AF029887-1|AAC48376.1|  407|Caenorhabditis elegans UNC-129 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 279 LSVDFILPCSESYVYITDDTTRDLIVFSLQDFRFTKISRASNT 407
           LSV  I  C++  V + ++T RDL+ F   D   T   R+S+T
Sbjct: 10  LSVFSIANCAKVDVDLINETIRDLLHFKSSDPNVTSFHRSSHT 52


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 225 KDIDNAFLHNGITSGLRSLSVD--FILPCSESYVYITDDTTRDLIVFSLQDFRFTKISRA 398
           KD   A L+  I   +  +SVD  ++L    S + IT+  TR+   F      FT++SR 
Sbjct: 771 KDQKTAALYRTILEQIGEISVDTAYLLRYVRSVITITE--TRNYRHFMDNLVEFTQLSRD 828

Query: 399 SNTADSWK 422
           +   D WK
Sbjct: 829 NKFRDVWK 836


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 226 FLNCGCSSYLLKSSNDAGLTCFLIPGISRYPVSTNHILEQIASTIVKTDIN 74
           F NC C  + L  +N A      +  ++RYP  T    E    TI+ TD N
Sbjct: 157 FYNCSCLLFFL--TNPADQEAAKLHALTRYPCPTTEFFE-FPVTILLTDQN 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,623
Number of Sequences: 27780
Number of extensions: 363108
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)