Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0874
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3) ide...    31   1.1  
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative            29   2.5  
At4g19960.1 68417.m02923 potassium transporter family protein si...    29   2.5  
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    29   3.4  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    29   4.4  
At2g14880.1 68415.m01691 SWIB complex BAF60b domain-containing p...    29   4.4  
At1g60530.1 68414.m06814 dynamin family protein similar to mx2 p...    28   5.9  
At5g48090.1 68418.m05941 expressed protein ; expression supporte...    28   7.7  

>At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3)
           identical to 2-isopropylmalate synthase (IMS3)
           [Arabidopsis thaliana] GI:15983745; identical to cDNA
           2-isopropylmalate synthase (IMS3)  GI:15983744
          Length = 506

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -1

Query: 479 VICAILRC*HLS-AYSW----HHKFPRISRITCAADFRKTKVLKREDNEVAGSVVSNV 321
           VICAI RC H     +W    + K PRI   T  +D      LK+   EV    VS++
Sbjct: 158 VICAIARCKHRDIEATWEALKYAKRPRILVFTSTSDIHMKYKLKKTQEEVIEMAVSSI 215


>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
          Length = 681

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 516 RLKYVYEDKDFCCNLRD 466
           R++YVYED  FC NL D
Sbjct: 142 RMRYVYEDTPFCLNLID 158


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -2

Query: 685 TRPLNHVLDHTVDL*NLKNRHSVRMFHSAFFYIFQLLACIVFQTLSTKTERVSLHRT 515
           T  +NH  D TVDL +  N H+    H+    +F  +      TL T     SLH T
Sbjct: 705 TYSVNHTQDSTVDLIHNNNNHN----HNNNMDMFSSMVDYTVSTLDTIVSAESLHNT 757


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -2

Query: 391 LIFVKRKS*SEKTMRSRVVSSVMYT*DSEHGNIKSTDRDR 272
           +IFVK K+ ++K  ++  ++ + Y   S HGN+  +DRD+
Sbjct: 344 IIFVKTKASAQKVHKA--LAEMGYDVTSVHGNLTESDRDK 381


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 163 FLIPGI-SRYPVSTNHILEQIASTIVKTDINSLPT 62
           F+ P + + YP+   + + Q+A + V TD+NS P+
Sbjct: 598 FMDPSLGNEYPLELAYTMAQLAKSCVATDLNSRPS 632


>At2g14880.1 68415.m01691 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 141

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 549 PQKQKELVCIERLKYVYEDKD 487
           PQ ++E++C E+LK ++E +D
Sbjct: 105 PQNKREILCDEKLKKIFEGRD 125


>At1g60530.1 68414.m06814 dynamin family protein similar to mx2
           protein GI:5578742 from [Mus musculus musculus];
           contains Pfam profile PF00350: Dynamin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 196 LKSSNDAGLTCFLIPGISRYPVS--TNHILEQIASTIVK 86
           +K +N   LT   +PGI+R PV+    +I EQI+  I+K
Sbjct: 156 VKKNNVPDLTMVDLPGITRVPVNGQPENIYEQISRMIMK 194


>At5g48090.1 68418.m05941 expressed protein ; expression supported
           by MPSS
          Length = 636

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 549 PQKQKELVCIERLKYVYEDKD----FCCNLRDFALL 454
           P+K KE+V  ERL +  E+ D    FCC   DF+ L
Sbjct: 414 PEKLKEIV--ERLHWYVENGDTVVDFCCGSNDFSCL 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,324
Number of Sequences: 28952
Number of extensions: 320264
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)