BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0873 (787 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.0 SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.3 SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 9.3 >SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 265 Score = 26.6 bits (56), Expect = 4.0 Identities = 27/98 (27%), Positives = 44/98 (44%) Frame = -1 Query: 760 YFEEMYYNFENIKIHN*FIRNYLNSRKINYSLLC*EQN*FMGRYEKKTNKTNHRIN*TLS 581 +F + Y + K IR +LNS+ SLLC E N + R + N+RIN + Sbjct: 66 WFVQTYLEVDLSKKVKKGIREFLNSQSRFQSLLCSEHN--VPRRLHLSISENYRINYSTK 123 Query: 580 SLILIYNAINATKSLALNKLSHRHHVHTIKINLKQTRV 467 + L++ T +L L R + N ++TR+ Sbjct: 124 NQ-LVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRM 160 >SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1158 Score = 25.4 bits (53), Expect = 9.3 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = -3 Query: 413 FCHSSYTLQCKRKIYMQKKIPRLHI 339 F ++ L CK KI M++++ +LH+ Sbjct: 695 FLLDNFLLLCKIKIQMKRRVHKLHL 719 >SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 585 Score = 25.4 bits (53), Expect = 9.3 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -3 Query: 392 LQCKRKIYMQKKIPRLHISRSVV 324 ++CKRK +++ I R H +SV+ Sbjct: 66 IKCKRKDLLKRHIQRFHNDKSVI 88 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,078,122 Number of Sequences: 5004 Number of extensions: 63591 Number of successful extensions: 121 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 381366860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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