Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0873
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)                 32   0.61 
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
          Length = 362

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 341 YEVGVFFFAYRFSFCIVTYSYCDRNMETKVIYP*SLHRPIT 463
           Y +G   FAY F+FC VTY   DR     +++P S H  +T
Sbjct: 103 YVIGYILFAYMFNFCGVTY---DRYQ--AIVHPLSYHAKMT 138


>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = -1

Query: 391 YNAKGKSICKKKYPDFISQGRWCH*LYLQVPSFFIAFVGRRT-----YGPPDGEWLP 236
           YN KGK   KK    FI  G W     L +P F   +          Y PPD  WLP
Sbjct: 195 YNDKGKMSIKKLRYIFI--GVWLGAAVLNLPLFLTIYYEASKHFCFEYWPPDLPWLP 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,943,283
Number of Sequences: 59808
Number of extensions: 438387
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)