Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0870
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    30   0.48 
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    29   1.1  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    26   5.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   5.9  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.8  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = +2

Query: 155 LYNDLVDNYRFLPSSRELPIHLNPSNIHILMDVSSLSTFYENNKIIFVVKIPLVNSLEFS 334
           L++D ++++    S++   IH N           ++ TF ENN ++ V++      + + 
Sbjct: 260 LWSDPLEDFGSEKSNKHF-IHNNVRGCSYFYSYQAVCTFLENNNLLSVIRAHEAQDVGYR 318

Query: 335 MYRVLPYPLSFKNESYITIIPTTNYI 412
           MYR       F   S +TI    NY+
Sbjct: 319 MYRKTK-TTGF--PSLMTIFSAPNYL 341


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 652 CKYPFVSA*FLPYFNISFDCFNRTTIRHGYWCLCNNFAFTYRV 524
           C  PF    +L YF +S    +    R GYW L  N  F Y +
Sbjct: 62  CGSPFTRI-WLEYFEVSLRKNDVDHFRPGYWILDTNIDFFYEI 103


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +2

Query: 539 SEIVTKTPISMPDSCSIKTIKRDIEVWQELSGNKWIF 649
           + +  K  +S+P+     T ++ +E ++ ++G KW +
Sbjct: 263 NNLANKPNVSLPEDVVEATRRKYVEAYEMITGKKWSY 299


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 227 SNIHILMDVSSLSTFYENNKII--FVVKIPLVNSLEFSMYRVLPYPLSF 367
           S +  L D  S STFY  N +   F++ + ++N +        P PLS+
Sbjct: 218 SYVFRLFDRVSSSTFYFFNSLFAYFIILLRIINEVILLAINYRPIPLSY 266


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 311 LVNSLEFSMYRVLPYPLSFKNESYITIIPTTNYIAFSRDRSQYCHFNDLSKCKSISQNYI 490
           ++ +L      VLP    F+N +++   P  N  +F R+     H +++ +C     NY 
Sbjct: 449 VLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSF-RENMINVHLSNI-QCDLKDVNYY 506

Query: 491 CK 496
            K
Sbjct: 507 IK 508


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/77 (19%), Positives = 34/77 (44%)
 Frame = +2

Query: 467 KSISQNYICKNVNILSSITYPICESEIVTKTPISMPDSCSIKTIKRDIEVWQELSGNKWI 646
           +++ Q  + +  ++++ +   +  SE + + P +MP SC         + + E    +  
Sbjct: 388 QALQQGILAEQQDLVAQLRDIVLRSETLAENPSNMPGSCLPGASSNTADEFTE----QLN 443

Query: 647 FAMSRAAKLSIDCPDKN 697
              +  A+LS  CP  N
Sbjct: 444 LLKNEVARLSAICPSPN 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,658
Number of Sequences: 5004
Number of extensions: 73110
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)