Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0870
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_23412| Best HMM Match : Extensin_2 (HMM E-Value=0.033)              31   1.2  
SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       30   2.7  
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_6809| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  

>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +2

Query: 458  SKCKSISQNYICKNVNILSSITYPICESEIVTKTPISMPDSCSIKT--IKRDIEVWQELS 631
            +K K   + YICKNV  LS+    +CE+         +    S+ T  +    E   E S
Sbjct: 5611 TKRKEGGRKYICKNVLKLSTANVGLCETVEGEPKHFMVFVGSSVPTALVLHTFETKSEWS 5670

Query: 632  GNKWIFAMSRAAK-----LSIDCPDKNIYEINI 715
               W++ + +  K     +S+    K  YEI I
Sbjct: 5671 KEAWVYDLKKLLKMDLGTISLTLSSKQSYEIPI 5703


>SB_23412| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 315

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 350 PYPLSFKNESYITIIPTTNYIAFSRDRSQYCH-FNDLSKCKSISQNYICKNVN 505
           PY     N  Y+       Y+  + +R   C  FN    CK++++ Y+CK +N
Sbjct: 80  PYVCKALNRPYVCKALNRPYVCKALNRPYVCKAFNRPYACKALNRPYVCKALN 132


>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 485 YICKNVNILSSITYPICESEIVTKTPISMPDSCSIKTI 598
           Y+ KN    +SI YP C+++   + PI +P    IKTI
Sbjct: 269 YLWKNYKN-TSIVYPPCDTKSFQEIPICLPQDGVIKTI 305


>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
 Frame = +2

Query: 149 QQLYNDLVDNYRFLPSSRELPIHLNPSNIHILMDV-SSLSTFYENNKIIFVVKIPLVNSL 325
           ++LYN L+  Y  L S+ +     N S +  L+ +  +LS+  +  K    V I L  + 
Sbjct: 302 KRLYNFLI-KYDIL-SNNQYGFRKNHSTVLALLHLYDTLSSAIDYKKYTLGVFIDLSKAF 359

Query: 326 EFSMYRVLPYPLSFKNESYITIIPTTNYIAFSRDRSQYCHFNDLSKCKSI 475
           +   + +L   L+  +   I   P   + ++  DR Q+ +FN +S C+ +
Sbjct: 360 DTVNHGIL---LAKSHNYGIRGTPLKWFESYLSDREQFVNFNGVSSCRKL 406


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 17  RIKIMEVVYMLENNIITLSFK-LEDIANGLMFSKNNV 124
           ++KI++V+YM   NI  +S K L  +  GL+FS N++
Sbjct: 363 KVKILDVIYMDRINIRCVSLKDLLVVRAGLLFSGNSL 399


>SB_6809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
 Frame = +2

Query: 203 ELPIHLNPSNIHILMDVSSLSTFYENNKIIFVVKIPLVNSLEFSMYRVLPYPLSFKNESY 382
           E  I   P+ +HI  D   L  F+E  KI  + K   V  L F +        +   +SY
Sbjct: 51  EKGIENGPATLHIGYDYRGLPAFFEIKKICLLDK--NVEDLMFVVTAKETVKFNDHFQSY 108

Query: 383 ITIIPTTN---YIAFSRDRSQYCHFND-LSKCKSISQNYICKNVNILSS 517
             I+P+      +A++R  S Y   N  + + +  +  Y+C    I S+
Sbjct: 109 -EIVPSPENDLMVAYARQFSCYLPLNQVIPRGRRTTTRYVCMRFEIEST 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,217,408
Number of Sequences: 59808
Number of extensions: 471853
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)