Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0869
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    30   0.45 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   4.2  

>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 155 IINIIKYHTLNSKKKKSMLYIKTIFSSVK*KNNNCANFEYII 30
           ++NI      NSKK+KS+    TI  S + K++  A F YI+
Sbjct: 458 VVNIFFLKHQNSKKQKSLASSSTIDLSEQPKDDKDARFHYIL 499


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 258 SWKWSEALRCSYIIFSSEFLLITYWSLTIKIRLCYHK 148
           +W W+  + C        FLL  Y+ + ++IR  Y++
Sbjct: 151 NWTWAHVVICYVFNVLVLFLLARYYQIVMRIRQRYYR 187


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -2

Query: 204 FLLITYWSLTIKIRLCYHKYYKISHFKFKEKKIYAI 97
           F    +W   +   L Y  Y++++HF      IY +
Sbjct: 352 FTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYTV 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,343
Number of Sequences: 5004
Number of extensions: 55671
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)