Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0867
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13070.1 68418.m01498 MSF1-like family protein similar to px1...    91   6e-19
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont...    33   0.16 
At5g12870.1 68418.m01477 myb family transcription factor (MYB46)...    33   0.28 
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    31   0.85 
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    30   2.0  
At4g35210.1 68417.m05004 hypothetical protein contains Pfam prof...    30   2.0  
At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family pr...    30   2.0  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    29   2.6  
At1g36510.1 68414.m04539 hypothetical protein                          29   2.6  
At5g23060.1 68418.m02696 expressed protein                             29   3.4  
At4g22790.1 68417.m03289 MATE efflux family protein contains Pfa...    29   4.5  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    29   4.5  
At5g25840.1 68418.m03066 expressed protein                             28   7.9  

>At5g13070.1 68418.m01498 MSF1-like family protein similar to px19
           [Gallus gallus] GI:969170; contains Pfam profile
           PF04707: MSF1-like conserved region
          Length = 183

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
 Frame = +2

Query: 119 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIG----TDVVERKV--VDGVLHTHRLV 280
           +K +  EH + HPWE V+ A+WRK+ +P N  ++      D + RK+    G LHT R +
Sbjct: 2   VKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRAL 61

Query: 281 SSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHP 460
           +     P +   +IG   IC+  E + V+   R M L T N++   +I V+E +RY PHP
Sbjct: 62  TIHAPGPWFLHRIIG-QDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 461 SD-SSKTLLKQEAVVTVQGV----PLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTE 622
            + S+ T+  QE  + ++ +     ++  +E     K   N+ KGR+ +E +    + E
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAE 179


>At4g13560.1 68417.m02113 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein similar to LEA protein [Cicer arietinum]
           GI:2909420; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 109

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 566 NAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKA 745
           NAG+ R   +    ++    K+ A SAC  T +L    +    D+T SAR    D S  A
Sbjct: 7   NAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADGSHSA 66

Query: 746 KST 754
             +
Sbjct: 67  NKS 69


>At5g12870.1 68418.m01477 myb family transcription factor (MYB46)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 280

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +2

Query: 536 EDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSAR 715
           EDL+    S+   +  Q    + G+ D EIK   +S  K   + +S T   I++ ++S+ 
Sbjct: 81  EDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINN-SSSSP 139

Query: 716 RSMDDISSKAKSTLD 760
            +  D SS + S+LD
Sbjct: 140 NTASDSSSNSASSLD 154


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1219

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 623 IKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKS 751
           +KE+++S  K  DE+   T K ++D+  S    +  I S+ K+
Sbjct: 154 VKEISTSEAKLVDEIAVDTFKKLNDLAPSGNEGLVGIESRLKN 196


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 461 SDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISL 565
           +DSSKT +KQE + T++G  L  +   LL N + +
Sbjct: 424 ADSSKTTMKQEFMNTMKGEGLRGFYRGLLPNLLKV 458


>At4g35210.1 68417.m05004 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 250

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 533 MEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSA 712
           + D L   I L+      + + +    D  IK L    C  + + LSQ K+S+ +I +  
Sbjct: 51  LHDSLEKMIRLSVTNQALSQDQIEKLLDGSIKIL--DLCSISKDGLSQMKESLKEIQSIV 108

Query: 713 RRSMDDISSKAKSTL 757
           RR   D+S++ K  L
Sbjct: 109 RRKRGDLSAEVKKYL 123


>At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 418

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +2

Query: 380 QMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGV----PLSSYMEDLL 547
           QM L      F    +V ET+        SS+  + + A   VQG+    P S Y+    
Sbjct: 275 QMLLPQIESAFSVSKSVKETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTHKY 334

Query: 548 TNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKS 655
            +K++   GK   A+  + G   TE +    SA +S
Sbjct: 335 FSKVACAKGKTNNAMATLNGVMITEYRIALRSALRS 370


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 627 RSLQVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQ 746
           R+ Q Q  + Q +++H+Q+ Q    Q QQ+ Q    H  Q
Sbjct: 120 RAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQ 159


>At1g36510.1 68414.m04539 hypothetical protein
          Length = 351

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 599 VIGKFDTEIKELASSACKSTDELLSQTKKSI-DDITTSARRSMDDISSK 742
           ++ KF  E+  ++ SAC   +  +   + S+ DD  ++ +R  DD+ SK
Sbjct: 284 MVEKFAKELTVVSDSACDIINPKIEMIESSVVDDSPSTDKRIFDDVKSK 332


>At5g23060.1 68418.m02696 expressed protein
          Length = 387

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 641 SACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTL 757
           +A K+  ++  QT K+I+D    A  +MD ISS   S +
Sbjct: 151 NAAKTVTDVAQQTSKAIEDAKPIASSTMDTISSADPSVI 189


>At4g22790.1 68417.m03289 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 491

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 211 WIHRIRIFSPCCLSNCFPW 155
           W+  I++  PCCL+ C  W
Sbjct: 253 WLTLIKLSGPCCLTVCLEW 271


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 626  KELASSACKSTDELLSQTKKSIDDITTSARRSMDD-ISSKAK 748
            KE+    C ST E++S+T  S+D +  +  RS+D+  S KAK
Sbjct: 890  KEVVRQPCSSTLEIVSKT-YSVDSLLPALLRSLDEQRSPKAK 930


>At5g25840.1 68418.m03066 expressed protein
          Length = 173

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 389 LKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQ 511
           L+ T     H I++D T+   P P+ ++ TLL   A+  V+
Sbjct: 4   LQRTISDISHQISIDNTLTKEPSPTATATTLLSLSAISEVE 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,194
Number of Sequences: 28952
Number of extensions: 348791
Number of successful extensions: 1032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)