Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0865
         (818 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 126 SLQAAKNQTMVLHIMG-EEITGTGNLGDTIFTIHLASMNIGIGPIFMHMT*TSDRNSMGI 302
           +++  K +T+V  + G EE  G  +L  +       S  + + P +++ T  SDR S G 
Sbjct: 149 NIRKCKPKTVVPEVGGVEEAKGPVDLSKSEPEKKTESQPM-LWPAWVYCTRYSDRPSSGR 207

Query: 303 DLTDKRPQPPGLRTSKPAS 359
               +R + PG +   P +
Sbjct: 208 SPRTRRVKKPGAKQGAPTA 226


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 622 CLCFKRSHI*KSIGNPLCSDV 684
           C   K  +  K IGNP+C  +
Sbjct: 311 CAATKNPNFDKMIGNPICVQI 331


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 158 ATHYGGGNHRNWQPWGHN 211
           A    GGN+ N  P GH+
Sbjct: 182 AAQVSGGNNNNGTPGGHS 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,511
Number of Sequences: 336
Number of extensions: 5169
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)