Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0865
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1495 + 37769982-37771496 31 0.83
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 29 4.4
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 4.4
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 29 5.9
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 5.9
11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489... 28 7.8
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 7.8
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202 28 7.8
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 28 7.8
>01_06_1495 + 37769982-37771496
Length = 504
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = +2
Query: 269 DLNLRPEFNGNRFNRQTTATAGSPDIEACIRSCPVTSEYNPV--CGTNNE--TYNNLGRL 436
D NLR G+ +T A P ++ + S PVT P C N E + L +
Sbjct: 276 DANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTI 335
Query: 437 MCAQQCGVVVEIQRKSTCSAAN 502
+C + + TCS N
Sbjct: 336 LCVKNHYKRSHCDKSYTCSRCN 357
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 78 DNGQQ-GGKIPTIGVRASLQAAKNQTMVLHIMGEEITGTGNLGDTIFTIHLAS 233
+ GQQ G +I G + Q+A Q ++ I+G+E T +L IFT+ + S
Sbjct: 120 ETGQQLGARISFSGQVQNYQSAVQQ--LVSILGDEDTAAAHLSQCIFTVGMGS 170
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 20 YEWHN-RKNQDHGDWFHHGSRQWSTRRKDSHDW 115
Y+W N RK H +HG+RQ S + KD+ DW
Sbjct: 1221 YDWDNLRKEVLH----NHGNRQRSDKAKDTIDW 1249
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 209 NFHYPSGQHEHRYRPNFHAYDLNLRPEFNGNRFNRQTTATAGSPDIEA 352
+FH P+ +H + P FH+ + ++ PEF GNR + AG+P +A
Sbjct: 178 SFH-PAAIEDH-HAPLFHSNNHDIDPEFLGNR-HLHGVDIAGAPPAKA 222
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 190 VPVISSPIMCSTIV*FFAACRLARTPIVGIFPPC*PLSRSVVKPIAVILVFPVVP 26
V + SP+M S FF+A A T + FPP P S P V P +P
Sbjct: 169 VDLDGSPVMGSPFPVFFSASNTAATVVTSTFPPTLPAVSSAY-PNMVNQTMPNMP 222
>11_01_0610 +
4889158-4889386,4889584-4890297,4890814-4891166,
4891619-4891830,4892633-4892889,4892984-4893162,
4893901-4893948
Length = 663
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 503 RLLPSTYFSVVFQQQLRIAEHTLIFLNYCRSHYWYHKQDYIL 378
RL PS+ FS+ +LR+ ++ L Y W H +Y +
Sbjct: 497 RLFPSSRFSIWLDSKLRLQNDPILILEY---FLWRHGYEYAI 535
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 164 HYGGGNHRNWQPWG---HNFHYPSGQHEHRYRPNFHAYDLNLRPEFNGNRFNR 313
+Y G+ R+ PW H FH G + RY + + + + PE + +++ +
Sbjct: 1473 YYSEGDERSESPWVLEIHRFHGNGGSNLTRYHHIYGTWKMEVMPEKHVSQYQQ 1525
>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
Length = 580
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 185 RNWQPWGHNFHYPSGQHEHRYRPNFHAYDLNLR-PEFNG 298
+NW N+H P G+ ++Y N H ++ P FNG
Sbjct: 161 QNWDRRFVNYHEPPGRERNQYAENAHRRSKHVDFPIFNG 199
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 464 VEIQRKSTCSAANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCAS 634
V++ ST S V TS+ RGD L P N+ +S S + V S
Sbjct: 82 VDVNTTSTSSVPPVYENGPTSYSRGDEPLSNGPAPVNVPVSVSNPAPSHDVSSVGGS 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,077,776
Number of Sequences: 37544
Number of extensions: 590011
Number of successful extensions: 1588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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