Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0865
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 41 0.001
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 41 0.001
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 32 0.57
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 31 0.75
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.75
U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal glan... 29 3.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 5.3
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 29 5.3
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 29 5.3
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 29 5.3
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 29 5.3
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 5.3
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z73104-8|CAA97436.2| 108|Caenorhabditis elegans Hypothetical pr... 28 9.2
U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defecti... 28 9.2
U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defecti... 28 9.2
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 28 9.2
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 28 9.2
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +2
Query: 353 CIRSCPVTSEYNPVCGTNNETYNN---LGRLMCAQQCGVVVEIQRKSTCSAANVPTESST 523
C C + S + VCGT+ +TY N L C +Q ++V ++ C A P E
Sbjct: 319 CSEQCTMNSAH--VCGTDGKTYLNECFLKLAACKEQKDILV--WKRGNCDEAGSPCEKME 374
Query: 524 SFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRN 655
G +++ D A + C + C + RPVCA+NG T+ N
Sbjct: 375 CGFWGSCVVKP-DRTAECE-CPNRC--EDVMRPVCATNGETFDN 414
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +2
Query: 365 CP-VTSEYNPVCGTNNETYNNLGRLM---CAQQCGVVVEIQRKSTCSAANVPTESSTSFD 532
CP T E+ VCG++ +TY+N RL C Q + V+ S C A + E D
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKY--NSACEACKLKKEKC---D 519
Query: 533 RGDGLLQTTDVPANIQQCISLCP--QSEETRPVCASNGVTY 649
+ + A +C CP + EE + VC ++GVTY
Sbjct: 520 FYSACVVGENEKAEC-KCPDDCPSYEMEEGKEVCGTDGVTY 559
Score = 35.9 bits (79), Expect = 0.035
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Frame = +2
Query: 365 CPVTSE--YNPVCGTNNETYNNLGRLMCAQQCGV--VVEIQRKSTCSAANVPTESSTSFD 532
CP E PVC TN ET++N M + C +++++ + TC T S
Sbjct: 393 CPNRCEDVMRPVCATNGETFDNECE-MKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKP 451
Query: 533 RGDGLLQTTDVPANIQQCISLCPQ-SEETRPVCASNGVTYRNPLAIL-CAQMCGLDIRAT 706
Q V +C+ CP ++E + VC S+G TY N + A M +I
Sbjct: 452 ------QVCVVVDGKPKCV--CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVK 503
Query: 707 KLSAC 721
SAC
Sbjct: 504 YNSAC 508
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +2
Query: 353 CIRSCPVTSEYNPVCGTNNETYNN---LGRLMCAQQCGVVVEIQRKSTCSAANVPTESST 523
C C + S + VCGT+ +TY N L C +Q ++V ++ C A P E
Sbjct: 327 CSEQCTMNSAH--VCGTDGKTYLNECFLKLAACKEQKDILV--WKRGNCDEAGSPCEKME 382
Query: 524 SFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRN 655
G +++ D A + C + C + RPVCA+NG T+ N
Sbjct: 383 CGFWGSCVVKP-DRTAECE-CPNRC--EDVMRPVCATNGETFDN 422
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +2
Query: 365 CP-VTSEYNPVCGTNNETYNNLGRLM---CAQQCGVVVEIQRKSTCSAANVPTESSTSFD 532
CP T E+ VCG++ +TY+N RL C Q + V+ S C A + E D
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKY--NSACEACKLKKEKC---D 527
Query: 533 RGDGLLQTTDVPANIQQCISLCP--QSEETRPVCASNGVTY 649
+ + A +C CP + EE + VC ++GVTY
Sbjct: 528 FYSACVVGENEKAEC-KCPDDCPSYEMEEGKEVCGTDGVTY 567
Score = 35.9 bits (79), Expect = 0.035
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Frame = +2
Query: 365 CPVTSE--YNPVCGTNNETYNNLGRLMCAQQCGV--VVEIQRKSTCSAANVPTESSTSFD 532
CP E PVC TN ET++N M + C +++++ + TC T S
Sbjct: 401 CPNRCEDVMRPVCATNGETFDNECE-MKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKP 459
Query: 533 RGDGLLQTTDVPANIQQCISLCPQ-SEETRPVCASNGVTYRNPLAIL-CAQMCGLDIRAT 706
Q V +C+ CP ++E + VC S+G TY N + A M +I
Sbjct: 460 ------QVCVVVDGKPKCV--CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVK 511
Query: 707 KLSAC 721
SAC
Sbjct: 512 YNSAC 516
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 38.3 bits (85), Expect = 0.007
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Frame = +2
Query: 365 CPVTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQRKSTCSAANVPTESSTSFDRGDG 544
C S PVCGT+N TYNNL L C Q+ + TC + T G
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPICDNFG 78
Query: 545 LLQTTDVPANIQQCI-------SL-------CPQSE--------ETRPVCASNGVTYRNP 658
D QCI SL C + E PVC +NG YRN
Sbjct: 79 ETHINDCHFAQFQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFDPVCDTNGSVYRN- 137
Query: 659 LAILCAQMCGLDIRATKL 712
L + + C L + + ++
Sbjct: 138 LCVFQMRRCELQLESQRI 155
Score = 36.7 bits (81), Expect = 0.020
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Frame = +2
Query: 278 LRPEFNGNRFNRQTTATAGSPDIEACIRSCPVTSEYNPVCGTNNETYNNLGRLM--CAQQ 451
L +F+ NR ++ + C C + Y+P+CGTN T+ N L +
Sbjct: 743 LTDDFSSNRNFQKPNIEFKRENTFNCSMECD--NSYDPLCGTNGVTFTNACSLQKEICES 800
Query: 452 CGVVVEIQRKSTCSAANVPTESSTSFDR----------------------GDGL-LQTTD 562
+E+ C N P++ S D GD L + +
Sbjct: 801 ANSTIEVAYTGMCCDTNCPSDFSPVCDSKGSTHQNICHFGVKRCIAERTFGDVLTIDKFE 860
Query: 563 VPANIQQCISLCPQSEETRPVCASNG 640
V +++C + CP +E PVCASNG
Sbjct: 861 VCNEVKECNNACP--KEYSPVCASNG 884
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 353 CIRSCPVTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQR 478
C +C T E++PVC TN Y NL + ++C + +E QR
Sbjct: 115 CNHNCTNT-EFDPVCDTNGSVYRNL-CVFQMRRCELQLESQR 154
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 347 EACIRSCPVTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQRKSTCS 493
EAC P T + +P+C ++ TY NL + + +E+ K CS
Sbjct: 584 EAC--QMPCTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCS 630
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 341 DIEACIRSCPVTSEYNPVCGTNNETYNN 424
+++ C +CP EY+PVC +N + N
Sbjct: 864 EVKECNNACP--KEYSPVCASNGQNIVN 889
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 31.9 bits (69), Expect = 0.57
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Frame = +2
Query: 371 VTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQRKSTC-----SAANVPTESSTSFDR 535
+ ++YN N YN + C QQC Q + C S N T++ T + +
Sbjct: 193 IQNQYNQNQYQNQNYYNPYQQTQCQQQCAPQCSQQTSTNCQQCQNSCQNSNTQTITIYVQ 252
Query: 536 GDGLLQTTD-VPANIQQCISLC----PQSEETRPVCASN-GVTYRNPLAILCAQM 682
QT+ VP QQC C S++ P C+++ + P + C M
Sbjct: 253 ASP--QTSQCVPQCQQQCQQQCQTRTTASQQCAPACSTSCNQSCNQPAQMACQPM 305
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 317 TTATAGSPDIEACIRSCPVTSEYNPVCGTNNETYNNLGRLMCAQQCG-VVVEIQRKSTCS 493
TT G P ++ C+R S + +C N + N G C + VVV+++ + C+
Sbjct: 619 TTVKTGDPQVDDCLRRMS-DSGGSVICDCPNGQFKNTGNGQCEETLSLVVVKVKVNTVCN 677
Query: 494 AANVPTE 514
E
Sbjct: 678 TDKASLE 684
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Frame = +2
Query: 29 HNRKNQDHGDWFHHGSRQWSTRRKDSHDWGXXXXXXXXXXDYGATHYGGGNHRNWQPWGH 208
H + +HG H T +H +G H+ +H + + GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHH----GEHGTHHGHHGEHHHAPAHHGHHESHGH 447
Query: 209 NFHYPS--GQH-EHRYRPNFHAY 268
H P+ G H EH + P H +
Sbjct: 448 GHHSPAHHGHHGEHHHAPAHHGH 470
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Frame = +2
Query: 29 HNRKNQDHGDWFHHGSRQWSTRRKDSHDWGXXXXXXXXXXDYGATHYG----GGNHRNWQ 196
H+ HG HHGS +SH G H+G G +
Sbjct: 567 HHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGH 626
Query: 197 PWGHNFHYPSGQHEHRYRPNFH 262
H+ H P +H + + H
Sbjct: 627 HGAHHHHAPHHEHHEHHGDHHH 648
>U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal gland
toxin-relatedprotein 1 protein.
Length = 294
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 404 NNETYNNLGRLMCAQQCGVVVEIQRKSTCSAANVPTESSTSFDRGDGLLQTTDVP 568
NN Y ++ C + CG S S+A+ T SST D+ + T+D P
Sbjct: 212 NNSVYYDIMTTQCPRTCGRCTSSSTISATSSAST-TVSSTCVDQVNAATGTSDCP 265
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 393 TGLYSDVTGQLRMQASMSGDPAVAVVCLLNLFP 295
+G D+ G R S+ G PA+ CL+ L P
Sbjct: 2589 SGSLKDICGACRSMPSVIGTPAILSACLITLEP 2621
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 393 TGLYSDVTGQLRMQASMSGDPAVAVVCLLNLFP 295
+G D+ G R S+ G PA+ CL+ L P
Sbjct: 2589 SGSLKDICGACRSMPSVIGTPAILSACLITLEP 2621
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/107 (24%), Positives = 42/107 (39%)
Frame = +2
Query: 317 TTATAGSPDIEACIRSCPVTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQRKSTCSA 496
TT T +P ++ C C + C + + + C QQC V + +T +
Sbjct: 122 TTTTTPAPVVQ-CQPMCQ--QQCQSTCVQQQQPVSQC-QPQCQQQCNVACD----ATTTT 173
Query: 497 ANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASN 637
+ P + +Q PA QQC S C Q ++ CAS+
Sbjct: 174 TSAPQVIHIQLEIQQAQVQCQ--PACQQQCQSSCVQQQQPAKQCASS 218
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/107 (24%), Positives = 42/107 (39%)
Frame = +2
Query: 317 TTATAGSPDIEACIRSCPVTSEYNPVCGTNNETYNNLGRLMCAQQCGVVVEIQRKSTCSA 496
TT T +P ++ C C + C + + + C QQC V + +T +
Sbjct: 122 TTTTTPAPVVQ-CQPMCQ--QQCQSTCVQQQQPVSQC-QPQCQQQCNVACD----ATTTT 173
Query: 497 ANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASN 637
+ P + +Q PA QQC S C Q ++ CAS+
Sbjct: 174 TSAPQVIHIQLEIQQAQVQCQ--PACQQQCQSSCVQQQQPAKQCASS 218
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 164 HYGGGNHRNWQPWGHNFHYPSGQHEHRYRPNFHAYDLNLRPEFNGNRFNRQTTATAGS 337
HY G R GH+ HY +GQ + + + + NG NR T +++ S
Sbjct: 515 HYQNGQQRENGENGHHNHYQNGQSSNSWWSGNDGQTRQRKQQHNGYN-NRPTVSSSSS 571
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 164 HYGGGNHRNWQPWGHNFHYPSGQHEHRYRPNFHAYDLNLRPEFNGNRFNRQTTATAGS 337
HY G R GH+ HY +GQ + + + + NG NR T +++ S
Sbjct: 417 HYQNGQQRENGENGHHNHYQNGQSSNSWWSGNDGQTRQRKQQHNGYN-NRPTVSSSSS 473
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 393 TGLYSDVTGQLRMQASMSGDPAVAVVCLLNLFP 295
+G D+ G R S+ G PA+ CL+ L P
Sbjct: 2589 SGSLKDICGACRSMPSVIGTPAILSACLITLEP 2621
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 RKDSHDWGXXXXXXXXXXDYGATHYGGGNHRNWQPWGHNFHYPS--GQHEH 241
R H G D+G +GG +H W H+ H+ G H+H
Sbjct: 20 RGGDHGGGDHGGHDHGGHDHGGHDHGGHDHGGWGGHDHHDHHHGGWGGHDH 70
>Z73104-8|CAA97436.2| 108|Caenorhabditis elegans Hypothetical
protein K08D8.1 protein.
Length = 108
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 384 YSDVTGQLRMQASMSGDPAVAVVCLLNLFP 295
YSD T + ++G+PAV VV N FP
Sbjct: 45 YSDSTNNVYPPTQVAGEPAVIVVVPQNQFP 74
>U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defective
protein 9, isoformb protein.
Length = 135
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 494 AANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRNPLAILC 673
AA + ++ S RGDG +TD L P+S+ + S+G + +P +L
Sbjct: 16 AAMIVAATNASGQRGDGTPDSTDTQKGCSPQRELSPESDPS----TSSGDSCPSPPKMLH 71
Query: 674 AQMCGLDIR 700
+ CG +R
Sbjct: 72 CKECGTLVR 80
>U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defective
protein 9, isoforma protein.
Length = 357
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 494 AANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRNPLAILC 673
AA + ++ S RGDG +TD L P+S+ + S+G + +P +L
Sbjct: 238 AAMIVAATNASGQRGDGTPDSTDTQKGCSPQRELSPESDPS----TSSGDSCPSPPKMLH 293
Query: 674 AQMCGLDIR 700
+ CG +R
Sbjct: 294 CKECGTLVR 302
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 494 AANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRNPLAILC 673
AA + ++ S RGDG +TD L P+S+ + S+G + +P +L
Sbjct: 333 AAMIVAATNASGQRGDGTPDSTDTQKGCSPQRELSPESDPS----TSSGDSCPSPPKMLH 388
Query: 674 AQMCGLDIR 700
+ CG +R
Sbjct: 389 CKECGTLVR 397
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 494 AANVPTESSTSFDRGDGLLQTTDVPANIQQCISLCPQSEETRPVCASNGVTYRNPLAILC 673
AA + ++ S RGDG +TD L P+S+ + S+G + +P +L
Sbjct: 316 AAMIVAATNASGQRGDGTPDSTDTQKGCSPQRELSPESDPS----TSSGDSCPSPPKMLH 371
Query: 674 AQMCGLDIR 700
+ CG +R
Sbjct: 372 CKECGTLVR 380
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 347 EACIRSCPVTSEYNPVCGTNNETYNN 424
E C + P +E+NPVC +T+ N
Sbjct: 117 EKCSCTAPCPTEWNPVCDKKGQTHAN 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,407
Number of Sequences: 27780
Number of extensions: 503865
Number of successful extensions: 1486
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -