Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0859
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 29 0.58
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.77
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 27 3.1
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.1
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 26 7.2
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ... 26 7.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.5
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 25 9.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 9.5
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.58
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 479 SSFILKFSTRFPSTSDAGKSKRDHSSDGEYDRKHKDSRIMEEMQGLEE-LESKLSAYHVM 655
SS I +R S+++A ++D SS+ + +K R + + ++S LS M
Sbjct: 237 SSLIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESS-M 295
Query: 656 VEKEVLGKRDARSPSLDQVPAPPLDKPKWKMSMNAVKELGQ 778
EK+ ++ +S + PP K W+ ++ VK + Q
Sbjct: 296 KEKQSKIEKYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQ 336
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.1 bits (62), Expect = 0.77
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +2
Query: 449 TAKNRPRKTNSSFILKFSTRFPSTSDAGKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELE 628
T ++ + + + +K S ++PS D+ +DH+ D E + H D + +E G +
Sbjct: 694 TPVSKKQLSQPAAAIKASLKYPSHPDSLLEHQDHAGDTE-NEMHDD--VDKEQFGYSSMY 750
Query: 629 SKLSAYHVMVEKEVLGKRDARSPSLDQ---VPAPPLDKPK-WKMSMNAVKELGQEK 784
++++ E+ +R S+ Q +P P K K W+ N + ++ EK
Sbjct: 751 VFFRLFNLLYERLYELQRLEDQVSIIQQRIIPNPVSQKQKIWRDRWNDLSDVPDEK 806
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 417 HRLVRICLEP-VRLRIGQEKPIAVSY*NLAQDFLVQAMQASPRETIVLMESMIESIRTVE 593
++L+R LE VR R+ E P V L+ ++ A E + S E RT+
Sbjct: 211 YKLLRETLEASVRKRLMAEVPYGVLLSGGLDSSLIASIAARETEKLANSTSQSEEARTIT 270
Query: 594 LWKK 605
W K
Sbjct: 271 AWPK 274
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 464 PRKTNSSFILKFSTRFPSTSDAGKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLS 640
P NSS FST STSD ++D+ + EY K+ + + L +L L+
Sbjct: 121 PMPRNSSPSSTFST---STSDLNNIEKDNLVNSEYSSKYSSTTRIYPYHSLSQLTDLLT 176
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 362 VYDLRSLSLLKTSEASKLSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRFPST 520
VY+L+++ L+ T SK + I + A N P ++ T P T
Sbjct: 109 VYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPGDIYLASLDTAIPVT 161
>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 557 DGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVLG 676
D E ++ +S E G +ELE +++ H+M E LG
Sbjct: 65 DSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLG 104
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 9.5
Identities = 23/90 (25%), Positives = 39/90 (43%)
Frame = +2
Query: 287 SKASGILSLIFFNSAVQGP*FSKHLVYDLRSLSLLKTSEASKLSSIGSYLS*ASTAKNRP 466
S +S + + ++V P S L S+S+ T A SS+ ++ ++TA +
Sbjct: 191 SDSSSSTNTVILTTSVNSPAVSSSET--LTSVSITSTESAYTSSSVD--IAASTTASSTL 246
Query: 467 RKTNSSFILKFSTRFPSTSDAGKSKRDHSS 556
+ S + FST P+T S SS
Sbjct: 247 PVSTSEATVSFSTDIPATPSTLSSPASSSS 276
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -2
Query: 384 ERLLKSY---TKCLLNQGPCTAELKKIKDKIPEAL--ETHCAKCTDKQKQMAKQLAQGIK 220
ERL+KS KC LN + ++ K P ++ + +K++ L + ++
Sbjct: 433 ERLVKSQGDLVKCFLN---IQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDL-ENVE 488
Query: 219 KTHPELWDEFITFYDPQGKYQ 157
+T EL D I FYD G YQ
Sbjct: 489 ET--ELTDSPIYFYDTLGNYQ 507
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 308 IKFQKLWRPIVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFTTLKE 165
I FQ L R +VR + +++ RK++ + GTS LF ++ E
Sbjct: 88 INFQLLVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQSVFE 135
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 365 YDLRSLSLLKTSEASKLSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRFPSTSDAGKS 538
Y S S TS ++ LSS+ + + +S+ + + S S+R STS +G S
Sbjct: 503 YSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSS 560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,052
Number of Sequences: 5004
Number of extensions: 61794
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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