Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0858
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.8  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   2.4  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   4.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   4.2  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   7.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.8  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.8  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   9.8  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.8  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 RLLKGYVDCLLGKGRCTPDGKALKETLPDALE 242
           RL+  Y+D LL  G     GK LKE   + L+
Sbjct: 381 RLIAKYIDYLLRVGEQASGGKPLKEVFSEILD 412


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 428 VSFVISGAFDGIDFVFVSRLVDVVG-IIFNSQLLP*VR-PFIYQMSNDFVSSRLLFPSTL 255
           +S V +  FDGI  VF+  L    G + F++  L  +  P++ ++   F    +L+   L
Sbjct: 201 LSNVTTATFDGISNVFIGNLKSAAGNLYFSNTTLDNISVPYLTEIGQSFA---VLYSPEL 257

Query: 254 NTLMFKSI 231
            +L F ++
Sbjct: 258 TSLNFPNL 265


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 289 LSAPDFCFPVHLTHSCSRASGRVSFKALPSGVQRPLPRRQST*PLRSRLDS 137
           LS P+F  P   T +CS      +F  L S +        S  P  S+L+S
Sbjct: 172 LSFPEFDIPEIKTETCSNKDHLENFDYLSSSIPETSGPASSVLPSSSQLES 222


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 96  YTDKWDNINVDEILESNRLLKGYVDCLLGKGRCTPDGKALKETLPDAL 239
           +  K   +  +E+ E  + L+GYV+ +L K         + ET PD +
Sbjct: 850 HAQKESEVKYNELNEQVKTLEGYVETVLEKFNDLKIENKVPETAPDVV 897


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 312 KRPDLWKELAVKYDPDNIYQARYKDKIDAVKG 407
           + PD  +E   KY  D+ Y + +K  +DA +G
Sbjct: 346 RSPDSDEEKVYKYPNDDPYYSEFKIFLDAAEG 377


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 117 CYPIYQYRSIPHA 79
           CY IY Y+ IPH+
Sbjct: 467 CYYIYSYKLIPHS 479


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 201 DGKALKETLPDALEHECVKCTGK 269
           DG        +ALEH CV+C  K
Sbjct: 357 DGNERLVKFANALEHACVRCVEK 379


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/77 (20%), Positives = 29/77 (37%)
 Frame = +3

Query: 285 DKVIRHLVNKRPDLWKELAVKYDPDNIYQARYKDKIDAVKGSAYNEAYMHILARGSN*NC 464
           D  +  ++    D  +   V    +N       D + +V  + Y+E Y      G N   
Sbjct: 16  DPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFI 75

Query: 465 SFNDVLLVKKALIGFSL 515
              + L  ++AL  F+L
Sbjct: 76  DQIETLCQERALAAFNL 92


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 50  YYDQYFHCRLLIIYPV 3
           +YD YF CR  ++ PV
Sbjct: 305 FYDVYFQCRTRLLKPV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,748
Number of Sequences: 5004
Number of extensions: 41480
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)