Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0858
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1145 - 28000012-28000022,28000119-28000290,28000381-280004... 33 0.20
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 32 0.26
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586... 32 0.35
02_05_0029 - 25194827-25195095,25195129-25197970 29 3.3
07_01_0055 + 424097-427129 28 5.7
06_03_0014 - 15403508-15403648,15404091-15404204,15404253-154043... 28 5.7
04_04_0442 - 25229186-25229568,25229740-25232671 27 7.5
12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078 27 10.0
12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754 27 10.0
08_01_0106 - 762287-763393,763752-764414 27 10.0
07_03_1622 + 28193862-28195181 27 10.0
03_01_0481 - 3683912-3684694,3684811-3685107,3685199-3685414,368... 27 10.0
>06_03_1145 -
28000012-28000022,28000119-28000290,28000381-28000488,
28000578-28002152
Length = 621
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 249 CVKCTGKQKSGADKVIRHLVNKRPD--LWKELAVKYDPDNI 365
C C GK+ D +++H+ +K P+ W L +DP++I
Sbjct: 402 CPYCVGKKIPDIDSLLQHMRSKHPEGGFWTNLRQVFDPESI 442
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 249 CVKCTGKQKSGADKVIRHLVNKRPD--LWKELAVKYDPDNI 365
C C GK+ D +++H+ NK P+ +W +L DP+ I
Sbjct: 809 CPYCVGKKIPNTDALLQHMRNKHPEGSVWPKLLSVLDPNLI 849
>11_06_0297 +
22056644-22058212,22058316-22058423,22058513-22058678,
22059000-22059056,22059382-22059479,22059556-22059765,
22060469-22060582,22060819-22060948,22061165-22061298,
22062279-22062359,22062798-22062872,22063210-22063221
Length = 917
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 249 CVKCTGKQKSGADKVIRHLVNKRPD--LWKELAVKYDPDNI 365
C C GK+ D +++H+ NK P+ +W +L DP ++
Sbjct: 401 CPYCVGKKIPDTDSLLQHMRNKHPEGGVWLKLLSILDPKSV 441
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 186 GRCTPDGKALKETLPDALEHECVKCTGKQKSGADKVI--RHLVNKRPDLWKELAVKYDPD 359
G+ + KA ETL A V G + G D+++ ++ N D W + PD
Sbjct: 800 GQMEREFKAEVETLSKAQHPNLVLLQGYCRIGNDRLLIYSYMENGSLDHW----LHEKPD 855
Query: 360 NIYQARYKDKIDAVKGSAYNEAYMHI 437
+ ++ ++ KG+A AY+H+
Sbjct: 856 GPSRLSWQTRLQIAKGAARGLAYLHL 881
>07_01_0055 + 424097-427129
Length = 1010
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 186 GRCTPDGKALKETLPDALEHECVKCTGKQKSGADKVI--RHLVNKRPDLWKELAVKYDPD 359
G+ + +A E L A V G + G D+++ ++ N D W + D
Sbjct: 771 GQMEREFRAEVEALSQAQHKNLVSLRGYCRYGNDRLLIYSYMENNSLDYW----LHERSD 826
Query: 360 NIYQARYKDKIDAVKGSAYNEAYMH 434
Y +++ ++ +GSA AY+H
Sbjct: 827 GGYMLKWESRLKIAQGSARGLAYLH 851
>06_03_0014 -
15403508-15403648,15404091-15404204,15404253-15404339,
15404448-15404577,15404693-15404934,15410335-15410400
Length = 259
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +3
Query: 171 CLLGKGRCTPDGKALKET-LPDALEHECVKCTGKQKSGADKVIRHLVNKRPDLWKELAVK 347
C KG P KA+++ + L V+ G+Q + + + L K ++ KE+ V+
Sbjct: 132 CSKTKGFSEPVKKAIEDMHAQEILTSPSVE-DGQQAKTSIEDVSKLAAKTTNVMKEIQVE 190
Query: 348 YDPDNIYQARYKDKIDAVKGSAYNEAYMHIL 440
D + A +++++ +K A E Y H +
Sbjct: 191 LDAKKLESAVLQEELERLKAQAL-ENYRHCI 220
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 50 NDGMCGGHLGACG 88
N G+CGG LG CG
Sbjct: 709 NKGLCGGQLGKCG 721
>12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078
Length = 256
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 138 RGSHRRLCYPIYQYRSIPHAPK*PPH 61
R H +C P Y ++ IP P P H
Sbjct: 7 RADHTSVCNPTYTWQEIPDDPPLPGH 32
>12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754
Length = 297
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 138 RGSHRRLCYPIYQYRSIPHAPK*PPH 61
R H +C P Y ++ IP P P H
Sbjct: 7 RADHTSVCNPTYTWQEIPDDPPLPGH 32
>08_01_0106 - 762287-763393,763752-764414
Length = 589
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 345 KYDPDNIYQARYKDKIDAVKGS 410
+YDPD I+ + + D++ + GS
Sbjct: 509 RYDPDGIFSSEWSDQVLGISGS 530
>07_03_1622 + 28193862-28195181
Length = 439
Score = 27.1 bits (57), Expect = 10.0
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 54 MACVAVTWARAESTYTDKWDNINVDEILESNRLLKGYVDCLLGKGRCTPDGKALKETLPD 233
+AC V A + + WD + +EIL + L +C+L + R D + L
Sbjct: 112 LACPRVAAACVDYLESAPWDEADEEEILRTIPCLGPQYECVLARLR-PIDPAPVAGILLS 170
Query: 234 ALEHECVKCTGKQ--KSGADKVIRHLVNKRPDLWKELAVKYDPDNIYQARYKDKIDAV 401
A H + Q KS A + + +++ + D + +D D+I +++ KD + A+
Sbjct: 171 AFRHATSTRSPPQELKSAAQEQLEYMLTEDDD---APLLAFD-DDIVRSQVKDCVAAL 224
>03_01_0481 -
3683912-3684694,3684811-3685107,3685199-3685414,
3685503-3685829
Length = 540
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 90 STYTDKWDNINVDEILESN-------RLLKGYVDCLLGKGRCTPDGK 209
++YT D +NV+ +L++N + + Y+D LLG G DG+
Sbjct: 85 TSYTYIADPVNVEHVLKTNFTNYPKGEVYRSYMDVLLGDGIFNADGE 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,928
Number of Sequences: 37544
Number of extensions: 266680
Number of successful extensions: 795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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