Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0858
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58554| Best HMM Match : TAF (HMM E-Value=7.9)                       30   1.4  
SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   4.4  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     28   5.8  
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_14515| Best HMM Match : ScdA_N (HMM E-Value=6.1)                    27   7.7  

>SB_58554| Best HMM Match : TAF (HMM E-Value=7.9)
          Length = 321

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 213 LKETLPDALEHECVKCTGKQKSGADKVIRHLVNKRPDLWKELAVKYDPDNIY 368
           L E +PD ++H  +K    +K   ++V R      P  W+E     DP+  Y
Sbjct: 18  LDEDIPDDVKHRLLKPPVPEKVWTEEVWREFDPLLPGRWQEGPESLDPETYY 69


>SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 69  VTWARAESTYTDKWDNINVDEILESNRLLKGYVDC 173
           + W+  E  Y ++  + NV ++  SNRL    VDC
Sbjct: 225 LAWSHGECRYCNRVISANVSDLRISNRLSVNVVDC 259


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 322 SGRLFTKCLMTLSAPDFCFPVHLTHSCSRASGRVSFKALPSG 197
           SGRL ++ L +   P  C P     S    SGR+  + LPSG
Sbjct: 237 SGRLPSRWLPSRRLPSGCLPSRRLPSGRLPSGRLPSRRLPSG 278


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 303  LVNKRPDLWKELAVKYDPDNIYQARYKDKIDAVKGSAYNEAYM 431
            L N+R DL  +    Y  D +  ARY+D I  +K     + ++
Sbjct: 1711 LCNERDDLQVKYDKLYQADQVDDARYEDTIKDLKNKLQRQVFL 1753


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 36   ILIIVMMACVAVTWARAESTYTDKWDNINVDEILESNRLLKGYVDCLLGKGRCTPDG--- 206
            I+++VMM  VAV   + E  Y D  D  +VD+  E  RL   Y++  LG G C P+    
Sbjct: 1116 IVVLVMMLDVAVVMIKEEGIYLD--DLTSVDD--EIARL---YLNQALG-GACYPNAIRK 1167

Query: 207  KALKETLP 230
            + LKE  P
Sbjct: 1168 RDLKEPAP 1175


>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 273 KSGADKVIRHLVNKRPDLWKELAVKYDPDNIYQARYKDKIDAV 401
           +SG   +     +KR   W+E+   Y+ DN+Y   + +  D V
Sbjct: 86  ESGTKNIFGGYSSKRMKDWQEIIRLYEKDNVYLGEFDECQDIV 128


>SB_14515| Best HMM Match : ScdA_N (HMM E-Value=6.1)
          Length = 609

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 213 LKETLPDALEHECVKCTGKQKSGADKVIRHLVNKRPDLWKELAVKYDPDNIY 368
           L E +PD ++H  +K     K    +V R      P  W+E     DP+  Y
Sbjct: 29  LDEDIPDDVKHRLLKPLVPAKVWTKEVWREFDPLLPGRWQEGPESLDPEKYY 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,250
Number of Sequences: 59808
Number of extensions: 326163
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)