Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0857
         (813 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.    27   0.52 
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    26   1.6  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    25   2.8  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   4.8  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       24   4.8  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       24   4.8  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   6.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.5  

>AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 213 RIQNF-EPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDI 335
           RI +F  P+P+         +GD ++ LRT++ NR  L W I
Sbjct: 3   RIVSFISPVPLFLLLSLATLRGDPFVALRTSTTNRTLLCWAI 44


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 245 SEGHRKILQRRFIHHFTDDLGQSQQSVMGH 334
           SEG+RKIL R  + +     G  +  +  H
Sbjct: 206 SEGYRKILSREMLPYARQQFGDEEHYIFQH 235


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 EGHRKILQRRFIHHFTDDLGQSQQSVMGH 334
           EG+RKIL+R+ + +     G  +  +  H
Sbjct: 135 EGYRKILRRKMLPYARQKFGDEEHYIFQH 163


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 594 RVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEK 710
           R ++ +PQI      D F  D D+D    VG++ ++ E+
Sbjct: 309 RSKKTNPQIVEYEFDDDFPFDDDSDFDDDVGDRLESEEE 347


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 594 RVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEK 710
           R ++ +PQI      D F  D D+D    VG++ ++ E+
Sbjct: 79  RSKKTNPQIVEYEFDDDFPFDDDSDFDDDVGDRLESEEE 117


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 594 RVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEK 710
           R ++ +PQI      D F  D D+D    VG++ ++ E+
Sbjct: 79  RSKKTNPQIVEYEFDDDFPFDDDSDFDDDVGDRLESEEE 117


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 179  QCRQNSRCANMENTELRTNTRCSE 250
            QC Q  +C   +N E R   RC E
Sbjct: 998  QCNQYGQCPCNDNVEGRRCDRCKE 1021


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 270  KGDSYIILRTTSDNRNN 320
            +G+ ++ILRTT+D   N
Sbjct: 1049 QGNGHLILRTTNDQEGN 1065


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,256
Number of Sequences: 2352
Number of extensions: 16768
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)