Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0856
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.6  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   7.4  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 410  IKKKVGKSLRILFFKFIYILHSKSFNSVSTH 318
            ++K + K++R      I + HSKSF S STH
Sbjct: 1098 LRKSLDKNIRQSRSGSISLKHSKSFQSASTH 1128


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 21   QKRFLYLIYFYQITFESHLHEIKLIGINKKPFK 119
            ++ FL  +   ++   S LH++ L+ IN KPF+
Sbjct: 1681 KEEFLLTVDGIRLLVISQLHDLPLLNINIKPFQ 1713


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -2

Query: 425 ISHIRIKKKVGKSLRILFFKFIYILHSKSFNSVSTHDRIDRLTIKHH 285
           ISH +++    K L+ +F +F++   SKS   ++   ++ +  ++H+
Sbjct: 181 ISHEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLLEHY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,833
Number of Sequences: 5004
Number of extensions: 65188
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)