Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0856
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.36 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 371 FKFIYILHSKSFNSVSTHDRIDRLTIKHHTFCENLKTKRYVLLHYFTNN 225
           F F Y+L+ K+++  +T      L +K + FCE     R +  H   NN
Sbjct: 27  FGFSYLLNCKNYDHPTT-----LLKLKRYLFCEYDPNVRPISSHQIANN 70


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 102 NKKPFKAMCVFMDNN 146
           NKKP    CVF  NN
Sbjct: 32  NKKPLPTECVFCRNN 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,242
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)