Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0852
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    56   7e-09
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    33   0.033
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.13 
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   3.8  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +3

Query: 6   NAATLHYGHAGTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAV 185
           N  T+HY    T N+ I    ++ L D GG + GY  DI+ ++P NGKF+  Q+ +Y+AV
Sbjct: 295 NGLTIHY----TINNDIFRPDEMVLVDAGGEFGGYVTDISRTWPINGKFSTVQRDLYQAV 350

Query: 186 LFARDAVIREAKPGVFWH--EMHLTANRAMLAHLKRGGL 296
           L  +   I+       W   ++H  + + M   LK+ G+
Sbjct: 351 LNVQKKCIKYCCTSNGWSLADIHFESVKLMHEELKQVGI 389


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 36  GTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLI--YEAVLFARDAVI 209
           G P+ + + DGDI   D+   + G+  D+  ++    K   +  L+   E    A D  I
Sbjct: 193 GIPDQRPLEDGDIVNIDVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAI 252

Query: 210 REAKPGVFWHE 242
              KPGV + E
Sbjct: 253 AAVKPGVLFQE 263


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 507 FIPRLLDSARNNPEQSRFFNWHRVERFIGF 596
           F+PR L   ++N    ++ +W R+ +F+GF
Sbjct: 344 FLPRWLPCIKHNQHNEKWISWIRIPKFLGF 373


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 440 GQTTHSQTTLSWNGTDCRAGLLFYTKIIGFGPKQPGAVSFLQLAQSRTFHW 592
           GQ     +   W  T  +  L+ YT  I F   Q G  SFLQ  QS +F W
Sbjct: 277 GQFYFPSSVQCWFHTHFQPMLVEYTNGINF---QQGINSFLQGQQSISFSW 324


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 274 ASIARLAVRCISCQN-TPGFASLITASLAKS 185
           +SI  +A RCISC+  T G A  IT  L  S
Sbjct: 177 SSIGHMATRCISCRPLTSGSARRITGFLRLS 207


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 280 RWASIARLAVRCISCQ 233
           R++++ RL VRC+SC+
Sbjct: 163 RYSTLKRLMVRCLSCE 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,920
Number of Sequences: 5004
Number of extensions: 59735
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)