Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0852
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 217 1e-56
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 48 6e-06
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 30 1.7
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 29 4.0
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 6.9
06_03_1221 - 28514952-28518152 28 9.2
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 217 bits (529), Expect = 1e-56
Identities = 106/232 (45%), Positives = 139/232 (59%), Gaps = 1/232 (0%)
Frame = +3
Query: 6 NAATLHYGHAGTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAV 185
N++ LHYGHA PN + + DGD+ L DMGG Y Y +DITCS+P NGKF +Q ++Y AV
Sbjct: 259 NSSVLHYGHAAAPNDRTLNDGDMALMDMGGEYHCYGSDITCSYPINGKFNSNQTIVYNAV 318
Query: 186 LFARDAVIREAKPGVFWHEMHLTANRAMLAHLKRGGLLQGDIEEMIRNGVNGILQPXXXX 365
L A +AVI +PGV W +MH A + +L LK +L GD+ +M+ + + P
Sbjct: 319 LKAHNAVIAHMRPGVNWLDMHKLAEQTILESLKNERILHGDVTDMMAQRLGAVFMPHGLG 378
Query: 366 XXXXXXXXXXXXYLPNCPPRMTGP-LAKLRTARQLLAGMVLTVEPGCYFIPRLLDSARNN 542
Y P R P L+ LRT R+L GMV+TVEPGCYFI LL AR++
Sbjct: 379 HLLGIDTHDPGGY-PEGLERPKEPGLSSLRTIRELKEGMVITVEPGCYFIDALLIPARDD 437
Query: 543 PEQSRFFNWHRVERFIGFGGVRIEDDVLITDDGVENLTFVPRTVQEIEEFMS 698
P S+FFNW +E++ FGGVRIE DV +T G +NLT PR EIE M+
Sbjct: 438 PVSSKFFNWEEIEKYKSFGGVRIESDVYVTAHGCKNLTNCPRETWEIEAVMA 489
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 48.4 bits (110), Expect = 6e-06
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 444 KLRTARQLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDV 623
KL + L G+++T+EPG Y IP + N P+ R+ G G +RIED+V
Sbjct: 427 KLSKDKPLEPGVIITIEPGVY-IPPVPILKENAPD-----------RYRGIG-IRIEDEV 473
Query: 624 LITDDGVENLT-FVPRTVQEIEEFMSNGSN 710
LIT+ G E LT VP+ + I M+ GSN
Sbjct: 474 LITESGHEVLTASVPKEISHITTLMNMGSN 503
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 6 NAATLHYGHAGTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQ 164
N + +HY N + G++ L D+G Y GY +D+T ++P G+F+ Q
Sbjct: 336 NGSVIHYSR----NDGRVKAGELLLMDVGCEYHGYLSDLTRTWPPCGRFSPAQ 384
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 36 GTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARDAVIRE 215
G P+S+ + DGDI D+ GY D + +F G + K + + D I
Sbjct: 177 GIPDSRPLEDGDIINIDVTVYLNGYHGDTSATFLC-GNVDDKAKKLVQVTRECLDKAISI 235
Query: 216 AKPGV 230
PGV
Sbjct: 236 CAPGV 240
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 507 FIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDV 623
F P LL + N +S F W R+++++ G V DV
Sbjct: 57 FYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDV 95
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 507 FIPRLLDSARNNPEQSRFFNWHRVERFIGFGGVRIEDDV 623
F P LL + N ++ F W RV+++I G V DV
Sbjct: 53 FYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDV 91
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 553 DCSGLFRAESNNLGIK*QPGSTVSTIPAKSCLAVRSLA----RGPVILGGQLGRYPPTSC 386
+ S L R + NL G+ + + LAV ++A GP+ GGQ +PP
Sbjct: 606 ELSSLTRLQIVNLRWNRLTGTIPQALKELNFLAVFNVAYNDLEGPIPTGGQFDAFPPRDF 665
Query: 385 TSSP 374
T +P
Sbjct: 666 TGNP 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,877
Number of Sequences: 37544
Number of extensions: 418042
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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