Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0852
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...   241   5e-64
AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    38   0.006
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    36   0.041
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   2.7  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   2.7  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   2.7  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    28   6.2  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    28   6.2  
Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score =  241 bits (589), Expect = 5e-64
 Identities = 114/241 (47%), Positives = 156/241 (64%), Gaps = 1/241 (0%)
 Frame = +3

Query: 6   NAATLHYGHAGTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAV 185
           N + LHYGHA  PN K I DGD+CLFDMG  Y  YA+DIT SFP+NGKFTE QK++Y AV
Sbjct: 247 NGSVLHYGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFTEKQKIVYNAV 306

Query: 186 LFARDAVIREAKPGVFWHEMHLTANRAMLAHLKRGGLLQGDIEEMIRNGVNGILQPXXXX 365
           L A  AV++ AKPGV W +MH+ + + +L HLK+ GL+ GDI++ +   V  +  P    
Sbjct: 307 LAANLAVLKAAKPGVRWTDMHILSEKVILEHLKQAGLIVGDIDKAVEARVGAVFMPHGLG 366

Query: 366 XXXXXXXXXXXXYLPNCPPRMTGP-LAKLRTARQLLAGMVLTVEPGCYFIPRLLDSARNN 542
                       Y+ +  PR T P L  LRT R L+  M +T+EPGCYFI  LL+ A  +
Sbjct: 367 HLIGLDVHDCGGYMGDATPRSTLPGLKSLRTTRTLMERMAITIEPGCYFIDFLLNEALAD 426

Query: 543 PEQSRFFNWHRVERFIGFGGVRIEDDVLITDDGVENLTFVPRTVQEIEEFMSNGSNFNKE 722
           P++S F     ++++ G GGVRIEDDV+I   G ENL+ +PRTV+EIE FM++G  + ++
Sbjct: 427 PKKSEFLVKSEIDKYRGSGGVRIEDDVIIRASGNENLSDLPRTVEEIENFMASGGEWTEK 486

Query: 723 L 725
           +
Sbjct: 487 V 487


>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +3

Query: 9   AATLHYGHAGTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVL 188
           A T+HY  A       +   +  L D G +  GY +D+T  FP +G +++ Q  +YEA+L
Sbjct: 164 ANTIHYLDANND----LNPRECVLVDAGCDLNGYVSDVTRCFPISGFWSDAQLSLYEALL 219

Query: 189 FARDAVIREA--KPGVFWHEMHLTANRAMLAHLKRGGLLQG-DIEEMI 323
           +  + ++  A     V    +    N  + A     GL++  D +EMI
Sbjct: 220 YVHEELLTYAHSMEKVRLSALFRRMNELLAASFTELGLIRSTDHKEMI 267


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 36  GTPNSKIIVDGDICLFDMGGNYAGYAADITCSFPANGKFTEDQKLIYEAVLFARDAVIRE 215
           G P+ + + +GD+C  D+   + G+  D+  +F    K  E+ + + +         I  
Sbjct: 185 GIPDMRKLENGDLCNVDVTVYHRGFHGDLNETFLVGDKVDEESRKLVKVTFECLQQAIAI 244

Query: 216 AKPGVFWHEM 245
            KPGV + E+
Sbjct: 245 VKPGVKFREI 254


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 438 LAKLRTARQLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVER 584
           L  +RT    +   +  VE   +F+ RL+D  +NN E+++FF     ER
Sbjct: 306 LISIRTTVTNVRSRLAEVEGRNFFLERLIDDLKNN-EEAKFFEISLAER 353


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 438  LAKLRTARQLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVER 584
            L  +RT    +   +  VE   +F+ RL+D  +NN E+++FF     ER
Sbjct: 932  LISIRTTVTNVRSRLAEVEGRNFFLERLIDDLKNN-EEAKFFEISLAER 979


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 438  LAKLRTARQLLAGMVLTVEPGCYFIPRLLDSARNNPEQSRFFNWHRVER 584
            L  +RT    +   +  VE   +F+ RL+D  +NN E+++FF     ER
Sbjct: 932  LISIRTTVTNVRSRLAEVEGRNFFLERLIDDLKNN-EEAKFFEISLAER 979


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 392 CGRISA*LSSEDDWPSGQTTHSQTTLSWNGTDCRAGLLF 508
           C   +  L + +D+PS      QTTL W    C+   LF
Sbjct: 109 CAVSATCLQAHNDFPSSYLQCDQTTLRWVRKSCQENFLF 147


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 392 CGRISA*LSSEDDWPSGQTTHSQTTLSWNGTDCRAGLLF 508
           C   +  L + +D+PS      QTTL W    C+   LF
Sbjct: 109 CAVSATCLQAHNDFPSSYLQCDQTTLRWVRKSCQENFLF 147


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 392 CGRISA*LSSEDDWPSGQTTHSQTTLSWNGTDCRAGLLF 508
           C   +  L + +D+PS      QTTL W    C+   LF
Sbjct: 109 CAVSATCLQAHNDFPSSYLQCDQTTLRWVRKSCQENFLF 147


>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 204 VIREAKPGVFWHEMHLTANRAMLAHLKRGGLLQGDIEEMIRNGVNGI 344
           V+   KP V+W E+H   N  M  ++K      G    +I   +NG+
Sbjct: 265 VVYRCKPKVYWDEIHHCCNDVMQKYIKDD---NGQPGNLINGKINGL 308


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
            R107.8 protein.
          Length = 1429

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 237  HEMHLTANRAMLAHLKRGGLLQGDIEEMIRNGVNGIL 347
            H+     +  M+ ++     L+GDIEE+ RNG+  ++
Sbjct: 1132 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 1168


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
            homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 237  HEMHLTANRAMLAHLKRGGLLQGDIEEMIRNGVNGIL 347
            H+     +  M+ ++     L+GDIEE+ RNG+  ++
Sbjct: 1132 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 1168


>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 549 QSRFFNWHRVERFIGFGGVRIEDDVLITDDGVENL 653
           Q  FF+W  +    GFG +  E D L  D    NL
Sbjct: 367 QKYFFDWKEIPIVYGFGYIEYETDGLPEDKTTPNL 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,281
Number of Sequences: 27780
Number of extensions: 352077
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)