Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0851
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    28   1.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   3.0  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   4.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   9.3  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = +2

Query: 50  MSQAVKAITLEDEYKKKTGITPEDVRKMRQWLQTQPHLPR-DHLTDLDLILVYHCCHRSM 226
           + Q V++I   ++ K++     +++    Q  +    L R D   DLD   V+  C+  M
Sbjct: 473 LEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVH--CYEIM 530

Query: 227 EVSKQVLDLNCTLRTL-FTNLFKDRLPDGRTLVSMKVPLVLPLEVRA 364
               Q  D + +   L F  ++  RL DG++    K+PL LP    A
Sbjct: 531 LT--QTSDTSRSFSFLNFVAIWLSRLADGQSSTYPKMPLSLPFNENA 575


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 111 VIPVFFLYSSSKVIAFTAC 55
           +IP+F +Y SSKV  FT C
Sbjct: 61  LIPLFVIYVSSKVGVFTLC 79


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 521 KVTLSHLARLDIQTVQQFLFYLQEAMFVKLQGLH 622
           K+T   + +L   TVQQF+  L++A F  L G H
Sbjct: 261 KITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGRH 294


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 155 PHLPRDHLTDLDLILVYHCCHRSMEVSKQVLDLNCTLRTLFTNLFKDRL 301
           P L RD   DL    VY  CH S++ +K +++L    R +   L K+ +
Sbjct: 379 PKLGRDEAHDL----VYRLCHLSIQENKPLVELLLAERQVTNYLSKEEV 423


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 709 DNHHVNEFFLHKRLQNHQQTVHE*WRIHEM*ALEFDEHRL 590
           ++H+VN F L    +  ++  H  W   E   LE  EH +
Sbjct: 65  NSHNVNLFHLSPEFKRFKEDYHSPWFRQETLVLEGHEHNI 104


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 510 LTWTRSLYPILPDLIFRPYSSFYFICRRRCSSNSKA 617
           LT     YP  PD+IF  YS  ++   +   +NS A
Sbjct: 232 LTTNSHWYPCGPDVIFTNYSDEFYESYKSLLTNSDA 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,059
Number of Sequences: 5004
Number of extensions: 74738
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)