Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0851
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45990.1 68418.m05656 crooked neck protein, putative / cell c...    31   1.1  
At3g16390.1 68416.m02075 jacalin lectin family protein similar t...    28   6.1  
At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /...    28   6.1  
At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /...    28   6.1  
At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /...    28   6.1  
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c...    28   8.0  
At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family pro...    28   8.0  
At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD dom...    28   8.0  

>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 673

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -3

Query: 435 ASWNMKFLVL*SR----SLQYITAESSYARTSNGNTKGTFMLTKVLPSGSLSLNKFVNSV 268
           A WN++  V  ++     + Y  A S + R   G  +   +  K         NKFVN+ 
Sbjct: 74  ARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMK--NKFVNNA 131

Query: 267 RNVQLRSRTCLETSMLLWQQW 205
           RNV  RS T L     LW+++
Sbjct: 132 RNVWDRSVTLLPRVDQLWEKY 152


>At3g16390.1 68416.m02075 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767, epithiospecifier [Arabidopsis
           thaliana] GI:16118845; contains Pfam profiles PF01419
           jacalin-like lectin family, PF01344 Kelch motif
          Length = 467

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 577 ILFAGGDVRQTPRPTFHECAIIHGPFVDDSEAVYEERTH*HDGYPPDR 720
           I+  GG++   PR       +I G F  D+E +  ER    +G P  R
Sbjct: 380 IVIFGGEIAMDPRAHVGPGQLIDGTFALDTETLQWERLDKFEGTPSSR 427


>At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           phosphatidylinositol/phosphatidylcholine transfer
           protein SP:P24280 [Saccharomyces cerevisiae (Baker's
           yeast)]
          Length = 252

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 497 LVIVIDLDKVTLSHLARLDIQTVQQFLFYLQEAMFVKLQGLHFMNAPSFMDRLLMILKPF 676
           LV VIDL  +T  +L    + T  QF   LQ     +L   + ++ P F   +   +  F
Sbjct: 135 LVAVIDLANITYKNLDARGLITGFQF---LQSYYPERLAKCYILHMPGFFVTVWKFVCRF 191

Query: 677 MKKELIDMMVIHQIG--SKTIGKYLPIEGLPKQAGG 778
           ++K   + +VI   G   +   + +  + LP++ GG
Sbjct: 192 LEKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGG 227


>At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           phosphatidylinositol/phosphatidylcholine transfer
           protein SP:P24280 [Saccharomyces cerevisiae (Baker's
           yeast)]
          Length = 239

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 497 LVIVIDLDKVTLSHLARLDIQTVQQFLFYLQEAMFVKLQGLHFMNAPSFMDRLLMILKPF 676
           LV VIDL  +T  +L    + T  QF   LQ     +L   + ++ P F   +   +  F
Sbjct: 122 LVAVIDLANITYKNLDARGLITGFQF---LQSYYPERLAKCYILHMPGFFVTVWKFVCRF 178

Query: 677 MKKELIDMMVIHQIG--SKTIGKYLPIEGLPKQAGG 778
           ++K   + +VI   G   +   + +  + LP++ GG
Sbjct: 179 LEKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGG 214


>At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; similar to
           phosphatidylinositol/phosphatidylcholine transfer
           protein SP:P24280 [Saccharomyces cerevisiae (Baker's
           yeast)]
          Length = 239

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 497 LVIVIDLDKVTLSHLARLDIQTVQQFLFYLQEAMFVKLQGLHFMNAPSFMDRLLMILKPF 676
           LV VIDL  +T  +L    + T  QF   LQ     +L   + ++ P F   +   +  F
Sbjct: 122 LVAVIDLANITYKNLDARGLITGFQF---LQSYYPERLAKCYILHMPGFFVTVWKFVCRF 178

Query: 677 MKKELIDMMVIHQIG--SKTIGKYLPIEGLPKQAGG 778
           ++K   + +VI   G   +   + +  + LP++ GG
Sbjct: 179 LEKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGG 214


>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 705

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 288 NKFVNSVRNVQLRSRTCLETSMLLWQQW 205
           NKFVNS RNV  R+ T L     LW ++
Sbjct: 139 NKFVNSARNVWDRAVTLLPRVDQLWYKY 166


>At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family
           protein / ubiquinone biosynthesis Coq4 family protein
           contains Pfam profile PF05019: Coenzyme Q (ubiquinone)
           biosynthesis protein Coq4
          Length = 226

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 337 RNFHADQSPPIRKSILEQICEQRTQRAVEVKDLLGDLHASVAAVVDENEVQI 182
           RNF  D  PP+R    +++    T RA EV DL   L      ++ E+ +++
Sbjct: 98  RNFSPDDRPPVRFMETDELAYVAT-RAREVHDLWHTLFGLPTNLIGESSLKV 148


>At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 258

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 680 KKELIDMMVIHQIGSKTIGKYLPIEGLPKQ 769
           ++  I M ++H I    +G   P +G+PK+
Sbjct: 126 RERCIKMAIVHDIAEAIVGDITPSDGVPKE 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,900
Number of Sequences: 28952
Number of extensions: 406418
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)