Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0850
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    32   0.48 
At1g23060.1 68414.m02883 expressed protein Location of EST gb|T2...    29   3.4  
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm...    29   4.5  
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    28   6.0  

>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -3

Query: 274 NKRTKTFDKVNYIDHVSCVGARCVRQSVYLVPY----NRIASPASRTRRGYREAPFKKYA 107
           N    T DKV Y     CV    VR  + LVPY     R  SPA     G+ E   +K  
Sbjct: 408 NGPVSTLDKVAYYAISECVVVNAVRDGMNLVPYKYTVTRQGSPALDAALGFGEDDVRKSV 467

Query: 106 I 104
           I
Sbjct: 468 I 468


>At1g23060.1 68414.m02883 expressed protein Location of EST
           gb|T22158 and gb|AA395675
          Length = 367

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 199 QSVYLVPYNRIASPASRTR-RGYREAPFKKYAIKFESDLVELFSIGTARNH 50
           +++YL    R + P S T+ R + EA FKK  I+F S  VE  + G   +H
Sbjct: 43  RNIYLEEAERFSKPGSVTQMRAHFEAHFKKKGIRFPSS-VESQTWGEVVHH 92


>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
           gamma-amino-N-butyrate transaminase / GABA transaminase
           / beta-alanine--oxoglutarate aminotransferase identical
           to gamma-aminobutyrate transaminase subunit precursor
           [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
           contains Pfam profile PF00202: aminotransferase, class
           III; identical to cDNA gamma-aminobutyrate transaminase
           subunit precursor, nuclear gene for mitochondrial
           product GI:14030434
          Length = 504

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 145 AFGRLATLFDCRELNIRTD 201
           AFGRL T+F C + NI+ D
Sbjct: 303 AFGRLGTMFGCDKYNIKPD 321


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 161 RRYSIVGN*IYGLTDTPRPHARNVIYIINFIERFGAFICYP 283
           RR S V   +YG T  P P  +N  YI+   ++ G+F  +P
Sbjct: 90  RRNSFVDG-VYGTT-CPIPPGKNYTYILQMKDQIGSFYYFP 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,167
Number of Sequences: 28952
Number of extensions: 255471
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)