Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0849
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   4.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   7.3  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   9.6  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 304 LPIIYCNYTETLELISQGGWRI 239
           +P I+C Y+  +E+ +  GW+I
Sbjct: 663 VPAIHCPYSYCMEITNSSGWKI 684


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 304 LPIIYCNYTETLELISQGGWRIYVVDDYGFQ*PL 203
           LP++  NYTET  L S G  R  V+ D     PL
Sbjct: 190 LPVVKFNYTETSVLASAGMDRSIVIYDLRTSSPL 223


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 155 KKYIFNFT*NHINNLEMPREQIYKETFVVIEVALVN 48
           K  I++F   HI+ L++P EQI +ETF  +   + N
Sbjct: 197 KNKIYDF---HIDRLKLPHEQI-EETFTSLSTFVTN 228


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 526 NYFYQLIISMSSF--SAIVCCAIKHSRKYIDHT 434
           NYF+QL I++S    S   C  +  SR  +D T
Sbjct: 337 NYFFQLTIALSYLHKSGFACNKLTPSRILVDQT 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,237
Number of Sequences: 5004
Number of extensions: 73029
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)