Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0848
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64530.1 68418.m08110 no apical meristem (NAM) family protein...    33   0.15 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.4  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    29   3.1  
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At4g28750.1 68417.m04111 photosystem I reaction center subunit I...    27   7.2  
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    27   7.2  
At5g63680.1 68418.m07994 pyruvate kinase, putative similar to py...    27   9.6  
At3g53830.1 68416.m05947 regulator of chromosome condensation (R...    27   9.6  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    27   9.6  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    27   9.6  

>At5g64530.1 68418.m08110 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM (no apical meristem)
          Length = 187

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 495 PDRASSATRTSRADYRRSRAGHKPDFAR 578
           PD +SS++R+S+   R S + HKPD+++
Sbjct: 119 PDSSSSSSRSSKRSSRASSSSHKPDYSK 146


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 271 PHHSRLLAPYPRRPGLLPTPAWTPGPRRRHHLERP 167
           P   RL +P PRR GL P+P    G    +HLE P
Sbjct: 474 PPAQRLPSPPPRRAGL-PSPMRIGGSHAANHLESP 507


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 271 PHHSRLLAPYPRRPGLLPTPAWTPGPRRRHHLERPQIAR 155
           P  S    P P RP  +P     P P+R H LE+P+I R
Sbjct: 110 PIESPAYPPAPPRP--IPPHLRRPLPQRTHPLEQPEIQR 146


>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 658

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 AICGRSKWWRRRGPGVHAGVGSKP 230
           +ICGR  W+   GP +HA +   P
Sbjct: 52  SICGREGWFPHLGPCLHASIIKNP 75


>At4g28750.1 68417.m04111 photosystem I reaction center subunit IV,
           chloroplast, putative / PSI-E, putative (PSAE1)
           identical to SP|Q9S831; similar to SP|P12354 Photosystem
           I reaction center subunit IV, chloroplast precursor
           (PSI-E) {Spinacia oleracea}; contains Pfam profile
           PF02427: Photosystem I reaction centre subunit IV / PsaE
          Length = 143

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 305 GSRRGAMRLSLPAPLSPSCTISTAPRFASDTSVDTRSTPPP--PLRAS 168
           GSR        PAP S S   S A   A D +  T+  PPP  P R S
Sbjct: 38  GSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGS 85


>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
           family protein  ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 491

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 278 SLPA-PLSPSCTISTAPRFASDTSVDTRSTPPPPLRAS 168
           SLP  P++ S   ST  RFA D    T+  PP P+  S
Sbjct: 176 SLPVTPIAHSNPESTHGRFAVDLVTSTKKGPPLPIHRS 213


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 283 GFHSPHHSRLLAPYPRRPGLLPTPAWTPGP 194
           G+  P H    A YP  PG  P PA  PGP
Sbjct: 47  GYPPPPHGYPPAAYPPPPGAYP-PAGYPGP 75


>At5g63680.1 68418.m07994 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 STLVSEANLGAVDMVQ-EGESGAGSESLIAPRRLPNPCLESPQRMD 339
           +T V+ A L   D V   GES AG+   IA + +   C+E+   +D
Sbjct: 315 ATDVANAVLDGTDCVMLSGESAAGAYPEIAVKTMAKICIEAESSLD 360


>At3g53830.1 68416.m05947 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8 (GIi;10177674) [Arabidopsis thaliana]
          Length = 487

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 375 KECPKSKERIGKGAIETQREADIESNAGTATQG 473
           KEC  SK+ +GK    +  + DI S    A  G
Sbjct: 132 KECIPSKDPVGKQQSGSSEQGDIASQGSNAASG 164


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 272 PAPLSPS--CTISTAPRFAS-DTSVDTRSTPPPPLRASTD 162
           PA + P    TI+ AP     D++ +T  TPP PL  S++
Sbjct: 386 PATVVPDQDSTITAAPSVTQEDSAFNTEKTPPQPLSVSSN 425


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 272 PAPLSPS--CTISTAPRFAS-DTSVDTRSTPPPPLRASTD 162
           PA + P    TI+ AP     D++ +T  TPP PL  S++
Sbjct: 647 PATVVPDQDSTITAAPSVTQEDSAFNTEKTPPQPLSVSSN 686


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,622,568
Number of Sequences: 28952
Number of extensions: 266630
Number of successful extensions: 1060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)