Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0847
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   3.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   4.3  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   4.3  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.9  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 RQRYFKYLAFRSRLIVEIGRRENSFNFKQCFFL 248
           RQ   + LA   ++++ + +   +FN + CF L
Sbjct: 486 RQEQMRLLAVLEQVLINVAKNTPAFNLQSCFLL 518


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -1

Query: 600  PSKEY*ESFVIKKITYNLPDLLDLFKKNLFSHRPVYTAFSFKS*K*Y*NHIFLLRNICIV 421
            PSKE   S ++   ++ L +L+DL +   FS R   + F+ ++   Y  ++FLL+  C+ 
Sbjct: 1545 PSKEQMSSVIV---SFLLDELMDLTETRQFSDRSPNSEFTPENDSLYMYNVFLLQ--CLT 1599

Query: 420  NL 415
             L
Sbjct: 1600 EL 1601


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 251 LQKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRK 129
           L ++T+ ++KT    A F    +P  KV   S PIV++ +K
Sbjct: 59  LPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKK 99


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 206 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPT 114
           AY    ++PE KVF+  +P+   P+   KP  PT
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPT 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,872
Number of Sequences: 5004
Number of extensions: 59857
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)