Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0847
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 788 FKIFPVIYMSLLPCANQAGLSSLIKY*ATNFILKTIKKVFLKDRPKL 648
           + IF +I +S+  C     L+   +   T+ +   +K+VF+   P+L
Sbjct: 310 YLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRL 356


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 788 FKIFPVIYMSLLPCANQAGLSSLIKY*ATNFILKTIKKVFLKDRPKL 648
           + IF +I +S+  C     L+   +   T+ +   +K+VF+   P+L
Sbjct: 310 YLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRL 356


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 66  NNCLQCLIFRCIFLSRSRQA 125
           N C  C + +CI +  SR A
Sbjct: 118 NRCQYCRLKKCIAVGMSRDA 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,521
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)