Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0844
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 29 0.32
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 28 0.42
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 28 0.56
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 28 0.56
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 1.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 2.3
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 2.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 3.0
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 25 3.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 3.9
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 5.2
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 24 9.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 9.1
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.1
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 28.7 bits (61), Expect = 0.32
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -2
Query: 377 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPRFRNIKEGILFDES 201
+ +REQ ++ R + ++ + E + ER++ G + +PS F+ KE + FDE+
Sbjct: 652 IAAREQKLEEE-RAKQAKKAQAKAEQEKKQVERVMKG--KTSPSEMFKMFKEYLSFDEA 707
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 28.3 bits (60), Expect = 0.42
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 367 VSRDIRTTTEARRPGTARNTRRPK 296
V+R +RT+T RRP T R+PK
Sbjct: 21 VARKVRTSTTFRRPKTLELARKPK 44
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.9 bits (59), Expect = 0.56
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 367 VSRDIRTTTEARRPGTARNTRRPK 296
V++ +RT+T RRP T + +R+PK
Sbjct: 21 VAKKVRTSTTFRRPKTLQLSRKPK 44
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 27.9 bits (59), Expect = 0.56
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 310 TRRPKPTELSACCRERSETPRHRGF-EISRKAYSLT 206
T+RP+ LS C S+TP + E+S AYS+T
Sbjct: 206 TKRPRHVILSYECSTNSDTPEITQYQEVSSCAYSMT 241
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 345 PQRPGAQAQRETLGVRSRQS*ALAAGS-AQRRPVTAVSK 232
P +P + +TLG +R S A AGS A P TA SK
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSPPATADSK 334
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 31 YFQREIDFNVQLYEQPEI 84
YFQR ID N+Q+Y+ I
Sbjct: 507 YFQRLIDHNMQIYDDETI 524
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 375 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 256
A+P +G + PGA+ Q T R + +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 353 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 255
++HH+GP +H+E+ + E L+ A D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 3.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = -1
Query: 141 YYTFTSQPSVTITPTHRE*YFGLFIQLHI-------KIDFALKIIDVPVKRH 7
Y++ P+ T+T H E Y+ F+ L+I ++D A +P+KRH
Sbjct: 138 YFSILYIPTTTLTSFHEEAYYS-FLLLYIITTGKKFQLDSATSSNVLPLKRH 188
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 157 LPASSYMIQERFKNIDSSKSMPSLI 231
+PAS +Q+R ++ D S S+PS++
Sbjct: 54 VPASKSKVQKRNESEDISHSLPSIV 78
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 157 LPASSYMIQERFKNIDSSKSMPSLIFRNRGDGASLSAPGSKRSALSA 297
LPA+S + +NI++ S+ S + + + +++S P K S A
Sbjct: 771 LPATSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFMA 817
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 16 NRHIDYFQREIDFNVQLYEQPEI 84
N H+D E D +Q+ +QP I
Sbjct: 62 NGHVDSSSTETDIEMQVIQQPTI 84
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 340 EARRPGTARNTRRPKPTELSACCRERSETPRHRGFE 233
EA PG RNTR+ ++S ++ET + E
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQNTE 510
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 9.1
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = -3
Query: 322 TARNTRRPKPTELSACCRERSETPRHRGFEISRKAYSLTNQYF*IFLVSYNSMPVRQI 149
TA P + L + + S P S L N Y L +Y S+P+R++
Sbjct: 76 TAHKEETPYSSSLGS--HDSSSLPSSTNNRYSSVLKELCNTYLPSILSTYGSLPIRRL 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,544
Number of Sequences: 5004
Number of extensions: 30283
Number of successful extensions: 88
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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