Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0844
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0489 + 16503325-16503747,16503916-16503978 29 1.2
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 29 1.6
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 28 2.8
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 2.8
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 3.7
03_05_0057 + 20350971-20351405 27 3.7
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 27 3.7
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 27 3.7
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 27 3.7
01_01_1225 - 9894899-9895333 27 3.7
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 4.9
09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916... 27 6.5
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 27 6.5
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 27 6.5
11_06_0577 - 25158833-25162864 26 8.6
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 26 8.6
05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057 26 8.6
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 269 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 376
PAA+A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 301 PKPTELSACCRERSETPRHRGFEISRKA--YSLTNQYF*IFLVSYNS 167
P P EL CR ++ + +G I++ A YSL N LV NS
Sbjct: 335 PAPKELKLACRAAADHCKKKGKNITKLAMQYSLMNNEISTVLVGMNS 381
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 347 HHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPR-FRNIKEGILFDESIFLNLSC 180
HH P + +++ A LLP ALR + + R F + +L +FLNLSC
Sbjct: 18 HHGAQGPPRALTCASAAQPHAPALLPDALRCSLATRNFHELFHALL----LFLNLSC 70
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 328 PGTARNTRRPKPTELSA--CCRERSETPRHRGFEISRK 221
P + ++R+PKP A CR S RHRG S +
Sbjct: 31 PISPASSRKPKPNRARAGTLCRSSSRAERHRGGRTSTR 68
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 344 HRGPAPRHSEKHSASEADRAE---RLLPGALRDAPSPRFRN 231
+R P+PRHS S +E R + RL G RD P RN
Sbjct: 493 YRRPSPRHSRSRSPAEHQRRDVRNRLRSG--RDGGGPDHRN 531
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 259 LSAPGSKRSALSASDAECFSLCLGAGP 339
LS+P + R AL D EC S AGP
Sbjct: 74 LSSPKAAREALKVHDPECCSRSPSAGP 100
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 373 RAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 275
RA S+D R T + RP T R P P AC
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 305 PSVSRCAWAPGLCGGPDVP 361
P V+ +WAP CGG VP
Sbjct: 85 PPVAALSWAPARCGGGAVP 103
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 199 IDSSKSMPSLIFRNRGDGASLSAPGSKRSALSASD 303
I SM F+N+ D L PG K S + +D
Sbjct: 436 IQKQASMMERFFKNKKDSEKLEKPGGKDSGVQTTD 470
>01_01_1225 - 9894899-9895333
Length = 144
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 377 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGA 264
V + + H+ H R P+P + K S ++A A R LP A
Sbjct: 55 VVAAHRRHRRHRRSPSPPDA-KRSTADATVAPRFLPAA 91
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 371 SREQGHQDHHRGPAPRHSEKHSASEADRAERL 276
S +GH +HHR + A E DR + L
Sbjct: 50 SSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>09_02_0425 +
9167684-9167803,9168034-9168108,9168200-9168653,
9168735-9168784
Length = 232
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 269 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 376
P Q R P++ RC+W P L PA S+
Sbjct: 82 PTRRGQQQRRHAPALRRCSWEPLLALAAAAPARDSS 117
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 235 RNRGDGASLSAPGSKRSALSAS 300
R R GAS SA G RSAL AS
Sbjct: 29 RRRAPGASASAKGIPRSALRAS 50
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 353 QDHHRGPAPRHSEKHSASEA 294
+DHHR PR + SASEA
Sbjct: 714 EDHHRSKRPRTTTTSSASEA 733
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 214 SLTNQYF*IFLVSYNSMPVRQITSLLY 134
SL N IF SYN MP ++ LLY
Sbjct: 711 SLCNNAKKIFEFSYNDMPTEYLSCLLY 737
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 120 PSVTITPTHRE*YFGLFIQLHIKIDFALKIIDVPV 16
P T+TP H + Y LF Q + +I ++ +D P+
Sbjct: 264 PEGTVTPLHHDLYHNLFAQGNPQILVFIQRVDHPL 298
>05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057
Length = 206
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 325 GTARNTRRPKPTELSACCRERSETPRHRGFEI 230
G+ RP T S+CC S +PRHR E+
Sbjct: 62 GSTEKRHRPLGTTPSSCC--YSSSPRHRRREL 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,549,900
Number of Sequences: 37544
Number of extensions: 210100
Number of successful extensions: 757
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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