Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0844
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa...    28   1.8  
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch...    27   3.1  
At3g61940.1 68416.m06956 zinc transporter, putative similar to z...    27   4.1  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    27   5.5  
At3g27590.1 68416.m03447 hypothetical protein                          27   5.5  
At2g20370.1 68415.m02378 exostosin family protein contains Pfam ...    27   5.5  
At1g27060.1 68414.m03299 regulator of chromosome condensation (R...    27   5.5  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    26   7.2  
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote...    26   7.2  
At4g18160.1 68417.m02698 outward rectifying potassium channel, p...    26   9.6  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    26   9.6  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    26   9.6  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    26   9.6  

>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q90972 RING finger
           protein 13 {Gallus gallus}; contains Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 407

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 208 SKSMPSLIFRNRGDGASLSAPGSKRSALSASDAECFSLCL 327
           SKS   L F   G+G  L     K+  +S  DA C  +CL
Sbjct: 321 SKSRNDLEFSEEGEGGFLLLGSQKKRLISGEDASC-CICL 359


>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
           mitochondrial (NDK3) identical to Nucleoside diphosphate
           kinase III, mitochondrial precursor  (NDK III) (NDP
           kinase III) (NDPK III) (SP:O49203) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain;
          Length = 238

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 118 GL*SESIVMTLFALPASSYMIQER 189
           G+ S+S +  L ALPA++YMIQ++
Sbjct: 58  GVASKSWITGLLALPAAAYMIQDQ 81


>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; similar to zinc transporter
           ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
           of the cation diffusion facilitator (CDF) family, or
           cation efflux (CE) family, PMID:11500563
          Length = 334

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 359 GHQDHHRGPAPRHSEKHSASEADRAERLL 273
           GH DH  G    HS  H  S  +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 195  KY*FVKEYAFLDISKPR*RGVSERSR-QQALSSVGFGRRVFLAVPGRRASVVVLMSLL 365
            KY        +D++    RG+    R QQALSS     R  + V GR  ++ ++  +L
Sbjct: 2495 KYLLDDSVKIIDVTSQTLRGILSTERGQQALSSFDSCERALIEVHGRGVNLDIVEKIL 2552


>At3g27590.1 68416.m03447 hypothetical protein
          Length = 92

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 115 RGL*SESIVMTLFALPASSYMIQERFKNIDSSKSMPSL 228
           R L S S V   FAL  SS  +QER + I SS    SL
Sbjct: 16  RRLSSSSGVFYYFALLISSSRVQERNQRIHSSSQKTSL 53


>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 619

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 142 LLYFHFTALGNNHSDSQ 92
           LLYFHF  LG ++ D Q
Sbjct: 46  LLYFHFVVLGTSNIDKQ 62


>At1g27060.1 68414.m03299 regulator of chromosome condensation
           (RCC1) family protein low similiarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 386

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 323 AWAPGLCGGPDVPA 364
           +W  G CGGPDV A
Sbjct: 229 SWGRGFCGGPDVHA 242


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 368 REQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPRFR 234
           R++ H D+ R P+      H  S        +P  + D  S R R
Sbjct: 468 RDRRHHDYRRSPSYSEWSPHDRSRPSDRRDYIPNFMEDTQSDRNR 512


>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 960

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 263 LRDAPSPRFRNIKEGILFDESIFLNLSCII*LD-AGK--ANNVITILSLHSPR*QSLRLT 93
           L+   S  + +  +  L+   +  N+S ++ LD +GK  +  ++T  +   P  Q++ L+
Sbjct: 46  LKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLS 105

Query: 92  ENNISG 75
            NN+SG
Sbjct: 106 NNNLSG 111


>At4g18160.1 68417.m02698 outward rectifying potassium channel,
           putative (KCO6) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 436

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 279 ALSSVGFGRRVFLAVPGRR-ASVVVLMSLL 365
           ++++VG+G R F  +PGR  A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At5g28270, At2g05450,
           At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 341 RGPAPRHSEKHSASEADRAERLLPGALRDAPS 246
           R P+P H  +H   +    E+LLP  +   P+
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPA 712


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
           family protein low similarity to RNA polymerase IIA
           largest subunit [Trypanosoma brucei] GI:162215; contains
           InterPro accession IPR000722: RNA polymerase, alpha
           subunit
          Length = 1453

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = -3

Query: 361 RDIRTTTEARRPGTARNTRRPKPTELSAC--CRERSETPRHRGFEISRKAYSLTNQYF 194
           RD  +  E   P    ++R   P   S C  C  +        F +   AYS+ N YF
Sbjct: 28  RDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYF 85


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 341 RGPAPRHSEKHSASEADRAERLLPGALRDAPS 246
           R P+P H  +H   +    E+LLP  +   P+
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPA 703


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,936
Number of Sequences: 28952
Number of extensions: 159601
Number of successful extensions: 451
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)