Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0842
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    68   1e-12
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.80 
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   4.3  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.5  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   9.9  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 28/58 (48%), Positives = 40/58 (68%)
 Frame = +2

Query: 650 YVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQFHTTGLVWSGK 823
           ++ EM D+ QFY NRV+K++K KD   +EW R+++ LL++L  YVK    TGL WS K
Sbjct: 217 FMSEMKDSSQFYANRVMKEFKGKDDLQIEWVRSYLTLLTELITYVKTHFKTGLTWSTK 274



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
 Frame = +3

Query: 288 SLEPIPSDNMSVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAAT 467
           ++E +P+   S++ Y +     L  Y++LS++IGG +A Q+  V  AF    + + +A  
Sbjct: 98  AVEAVPA---SISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALK 154

Query: 468 KAKPSQ--AEEMQLLTPTSEQISAIQQYREKNRASQFFNHLSAISESIPALGW 620
             KP     E ++ L P   ++  I   R+++R +  FN LS +   I  LGW
Sbjct: 155 AQKPDMDSPELLEFLKPIQSELLTITNIRDEHRTAPEFNQLSTVMSGISILGW 207


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 102 GNEVEGTAAAHGSASDLETLIERLERVTSRLERL 203
           G EVEG     GSAS +  L++  E  + R+E L
Sbjct: 808 GLEVEGIYRISGSASQVRVLVDEFENGSIRMEHL 841


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 429 FQAQSRYIQLAATKAKPSQAEEMQLLTPTSEQISAIQQYREKNRASQ---FFNHLSAISE 599
           FQA S    L+   +KPSQ E       TS Q       ++K + S+   F + LS +S 
Sbjct: 148 FQASSAQATLSFVASKPSQPEGNLEDIQTSSQEEEHDNEKDKTKESKAKGFLDDLSGLSA 207

Query: 600 S 602
           S
Sbjct: 208 S 208


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 439 NPATYNWRQQKPSLPKLRK 495
           NP   +WR  KP +PK  K
Sbjct: 473 NPKAVSWRSAKPVVPKFNK 491


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
 Frame = +3

Query: 261 SLNTPP---PQESLEPIPSDNMSVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAF 431
           S++ PP   P+ +L P+ S        Q    GP +  +Q    +   +A+Q +   A  
Sbjct: 49  SVSLPPSHLPRSTLHPLLSQQQQP-AQQSPSLGPAQQNIQQPPSVS--IASQPHYAEAIV 105

Query: 432 QAQS-----RYIQL-----AATKAKPSQAEEMQLLTPTSEQISAIQQYREKNRASQF 572
             Q      +Y QL     AAT A P Q  ++Q + P       IQQ    N+AS +
Sbjct: 106 PIQQVLQPQQYRQLPPNMVAATNA-PQQHPQLQRMMPILSSNQPIQQLPLPNQASPY 161


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 468 KAKPSQAEEMQLLTPTSEQISAIQQYREK 554
           K  P + E  QL      ++S +QQYREK
Sbjct: 104 KTTPEEDELDQLCDEWKARLSELQQYREK 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,453
Number of Sequences: 5004
Number of extensions: 59382
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)