Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0842
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 53 3e-07
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 45 6e-05
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 30 2.0
03_05_1108 - 30458827-30459411,30459523-30459615 30 2.6
04_04_1383 - 33144047-33144603,33145554-33147129 29 6.0
04_04_0315 - 24331996-24332853 29 6.0
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 28 7.9
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 650 YVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSDLQAYVKQFHTTGLVW 814
+V+E +FY+N+VL ++K KD HVEW +A +L + L+ YVK F+ G VW
Sbjct: 159 HVEESWQMAEFYSNKVLVEYKSKDPDHVEWAKALKELFVPSLRDYVKTFYPLGPVW 214
Score = 36.7 bits (81), Expect = 0.023
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = +3
Query: 318 SVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAKPSQAEEM 497
++ + +LV G + + +IG +VA ++ AF + KP+
Sbjct: 44 AILAFDELVAGAVGRVSAAAGKIGAEVAEVTRVLEKAFLVGKDLLVRTKQTQKPTVDSIA 103
Query: 498 QLLTPTSEQISAIQQYREKNRASQFFNHLSAISESIPALGW 620
+ P +E I E R+S NHL A + S+ AL W
Sbjct: 104 VFMGPLNETILEANSLAEGTRSSHG-NHLKAAAGSLAALAW 143
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +3
Query: 318 SVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQ-AQSRYIQLAATKAKPSQAEE 494
++ Y + V G + +++IGG V ++ AF ++ R +Q + S A+
Sbjct: 47 AIVAYDEFVAGAVGRLTAAAEKIGGKVLDATKVLAEAFAVSKDRLVQAKQLQKPASMADA 106
Query: 495 MQLLTPTSEQISAIQQYREKNRASQFFNHLSAISESIPALGW 620
P ++ I+ E R +FNH+ ++++S+ AL W
Sbjct: 107 QDFFKPLNDVIAKAIAMTE-GRRPDYFNHIKSVADSLTALAW 147
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 650 YVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSDLQAYVKQFHTTGLVW 814
+V+E +FY N+VL +++ KD HVEW +A +L + L+ +VK+ + G W
Sbjct: 163 HVEESWQMAEFYNNKVLVEYRNKDADHVEWAKALKELYMPGLRDFVKKHYPLGPSW 218
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 63 ISLNTIGYFCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLERLP 206
+S + I CRF G E+ AA G + E + E +++ S+++RLP
Sbjct: 457 LSEDLITEMCRFGGAEIHPVAAFIGGVASQEVIKELIKQ--SKIDRLP 502
>03_05_1108 - 30458827-30459411,30459523-30459615
Length = 225
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = -2
Query: 192 IAR*RVPNARSASRDPMPSREQLRCPRLRYQKNDKNIL*CLMRSLTV 52
+AR RV ARSA R PS L PRLR + I C +R L V
Sbjct: 36 LARLRV--ARSAGRRAPPSFRSLSPPRLRTSASTATITPCRLRRLRV 80
>04_04_1383 - 33144047-33144603,33145554-33147129
Length = 710
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 416 RECCFSSAIPLHTTGGNKSQAFPS*GNAAS-DSDQRTDICYPAIS*KESR 562
REC S + H G N S A P AA+ D QR DI P S SR
Sbjct: 277 RECRGSHLLFFHGPGNNGSAAPPVQSAAATGDGPQRDDISLPDSSTPRSR 326
>04_04_0315 - 24331996-24332853
Length = 285
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 685 H*PRAQGLEGERQDPRRVVPRLGPTAVRF 771
H P+A+ ++GERQ PR L +A+ F
Sbjct: 55 HIPKAEAVQGERQSPRHGSMELSASALGF 83
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 344 PGSPPRLSPTVAADWRRRCYSS 409
PGSPPR +P +A W C S
Sbjct: 91 PGSPPRAAPAPSACWSALCRRS 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,249,139
Number of Sequences: 37544
Number of extensions: 461344
Number of successful extensions: 1466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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