Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0842
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-09
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              30   2.6  
SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   6.1  
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    29   6.1  
SB_873| Best HMM Match : DUF1269 (HMM E-Value=0.31)                    28   8.0  

>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 53.6 bits (123), Expect(2) = 2e-09
 Identities = 29/73 (39%), Positives = 43/73 (58%)
 Frame = +3

Query: 321 VNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAKPSQAEEMQ 500
           V+ Y   +   +   L++S +IGGDV +QA LV+ AF+AQ  ++ L +    PS      
Sbjct: 41  VSFYDKFLSESVAKCLKISSEIGGDVGSQAKLVDQAFKAQRDFLVLVSKHQCPSANVLQT 100

Query: 501 LLTPTSEQISAIQ 539
           LLT TS+ ISA+Q
Sbjct: 101 LLTKTSQAISAVQ 113



 Score = 26.6 bits (56), Expect(2) = 2e-09
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 141 ASDLETLIERLERVTSRLERL 203
           A +L+ L+ RLE VTSRLE +
Sbjct: 2   AGNLDPLVVRLEAVTSRLEAM 22


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 677 GRRHSFP*RTEPGREQRLTPSQSRDTLG---YRREMIKELRGAILFTILLDSRYL 522
           GR + +  RT  GRE+RL P + R+T G   +  E  ++   A+   IL+  R L
Sbjct: 291 GRHNIYSSRTGVGRERRLHPLRFRETRGSHFFELETAEDYMQAVAVIILIIKRKL 345


>SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1145

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 689 NRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQF-HTTGL-VWSGK 823
           +++LK WK+ +KT + W  +   +++  +  +K F HT  L +W  K
Sbjct: 112 SKILKTWKDGNKTWIAWTHSHTLVITQ-EILLKMFNHTLELKIWDMK 157


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 541 NIVKRIAPRSSLIISRRYPRVSRLWDGVSRCSRPGSV 651
           N VK   P S++IIS  Y    R WD  SR   P  V
Sbjct: 659 NCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEPVQV 695


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +3

Query: 270 TPPPQESLEPIPSDNMSVNGYQDLVQGPLRAYLQLSQQI--G-GDVATQANLVNAAFQAQ 440
           TPPP     P P+ ++S+ G++ +  G   A+ Q S+QI  G  +  T A ++     A 
Sbjct: 281 TPPPL-LFYPTPAVSLSIYGHRLVCHGLKGAWSQTSRQILFGLFEAYTNAEILKKNLSAD 339

Query: 441 SRYIQLAATKAKPSQAEEMQLLTPTSEQISAI 536
           +  + +   K K SQ +      P+  Q S I
Sbjct: 340 ALKVTIVEQK-KNSQVQRRSHTVPSIVQQSLI 370


>SB_873| Best HMM Match : DUF1269 (HMM E-Value=0.31)
          Length = 322

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -1

Query: 166 SISVSRSDAEP*AAAVPSTSLPEKRQKYPIVFNEITHSYKHFSSTLNRLFSCT 8
           S+S  R    P A A  S     +R K+P   NEITH Y+       R F+ T
Sbjct: 98  SVSSIRIWCPPPANAYRSGKHRRRRAKFPTPDNEITH-YRQVRKKYKRAFAVT 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,169,619
Number of Sequences: 59808
Number of extensions: 502726
Number of successful extensions: 1467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)