Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0842
         (829 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    27   0.53 
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   1.6  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.0  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 715 ERQDPRRVVPRLG-PTAVRFASVRQTVSHNRTCVV 816
           +++  R+ V R   P A+R AS  QTVS++  CVV
Sbjct: 796 DKETHRKSVQRAHRPGALRVASAFQTVSYDAACVV 830


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 308 GQHECQRISRPCPGSPPRLSPTVAADWRRRCYSS*PRECC 427
           G H CQR S+         SP  +   + RC+   PRECC
Sbjct: 172 GAHNCQRFSKL------NCSPQCS---QGRCFGPKPRECC 202


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 575 KELRGAILFTILLDSRYLFAGRSQKLHFLSLGRLGF 468
           +E+   I  T  +D   LFA   QK+H L     GF
Sbjct: 702 EEISTRITHTFFMDDLKLFAETVQKMHHLLKNVQGF 737


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,287
Number of Sequences: 2352
Number of extensions: 16049
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)